View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_18 (Length: 316)
Name: NF19434_low_18
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 9691429 - 9691286
Alignment:
| Q |
167 |
tgaacttgaaggaagaataataagtgatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatca-ttactct---ttctcaaa |
262 |
Q |
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| T |
9691429 |
tgaacttgaaggaagaataataagagatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcatttactctttcttctcaaa |
9691330 |
T |
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| Q |
263 |
tgcctcttttcaattgacaaggtgagttcattaataggcttcat |
306 |
Q |
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| T |
9691329 |
ctcctcttttcaattgacaaggtgagttcattaataggattcat |
9691286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 9691690 - 9691553
Alignment:
| Q |
33 |
actattactctactatgctttttatctcttaattagaattactaattagcactaagggacaattactctcaattataaataggcattatacaaggtnnnn |
132 |
Q |
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| T |
9691690 |
actattactctaatatgctttttatctcttaattagaattactaattaaccataagggacaattactcacaattataaataggcattatacaa-gttaaa |
9691592 |
T |
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| Q |
133 |
nnntcagaaattccatgttgcctcttctcctctctgaac |
171 |
Q |
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| T |
9691591 |
aaatcagaaattctatgttgcctcttctcctctctgaac |
9691553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 1933460 - 1933595
Alignment:
| Q |
172 |
ttgaaggaagaataataa-gtgatggaattggagctagggttacaaagttaggaggttaatcaagttttcatcatcat-tactct---ttctcaaatgcc |
266 |
Q |
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| T |
1933460 |
ttgaaggaagaataataaagagatgaaattggagctagggttacaatgttaagaggttaatctagttttcatcatcatctaccctttcttctcaaactcc |
1933559 |
T |
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| Q |
267 |
tcttttcaattgacaaggtgagttcattaataggctt |
303 |
Q |
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| T |
1933560 |
tc-tttcaattgacgaggtgagttctttaataggctt |
1933595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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