View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_20 (Length: 291)
Name: NF19434_low_20
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 43510593 - 43510740
Alignment:
| Q |
21 |
tatatccaatgtgggaacccttaaacaatagtcaacaattctcttctgaacattataagtgtaactgaaa----tacaagctttgagttttcatcaatgg |
116 |
Q |
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| T |
43510593 |
tatatccaatgtgggaacccttaaacaatagtcaataattctcttctgaacattataagtgtaactgaaaataatacaagctttgagttttcatcaatgg |
43510692 |
T |
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| Q |
117 |
attttcttcctcttcaatccatcaccaagtttcttagtcaccaatacc |
164 |
Q |
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| T |
43510693 |
attttctttctcttcaatccatcaccaagtttcttagtcaccgatacc |
43510740 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 43510807 - 43510863
Alignment:
| Q |
232 |
ggacttgtcgcattagcaccatcaaagacacgtcaacatcataactttcacaagaat |
288 |
Q |
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| T |
43510807 |
ggacttgtcgcattagtaccatgaaagacacgtcaacatcataactttcacaagaat |
43510863 |
T |
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