View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19434_low_21 (Length: 289)

Name: NF19434_low_21
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19434_low_21
NF19434_low_21
[»] chr7 (12 HSPs)
chr7 (24-273)||(46897713-46897963)
chr7 (24-103)||(5801114-5801193)
chr7 (24-103)||(44434752-44434831)
chr7 (28-101)||(24688861-24688934)
chr7 (24-103)||(24162244-24162323)
chr7 (24-103)||(11485899-11485979)
chr7 (24-103)||(10282550-10282629)
chr7 (24-54)||(24689332-24689362)
chr7 (24-54)||(35525898-35525928)
chr7 (27-103)||(1644478-1644553)
chr7 (71-103)||(28974886-28974918)
chr7 (24-56)||(35526468-35526500)
[»] chr8 (17 HSPs)
chr8 (27-103)||(5765443-5765519)
chr8 (24-103)||(35308207-35308286)
chr8 (26-103)||(6007616-6007693)
chr8 (26-103)||(15199674-15199751)
chr8 (24-88)||(27917495-27917559)
chr8 (24-88)||(27963914-27963978)
chr8 (24-103)||(5764825-5764904)
chr8 (24-103)||(40796250-40796329)
chr8 (26-103)||(6007973-6008050)
chr8 (24-101)||(28828101-28828178)
chr8 (24-88)||(27881272-27881336)
chr8 (24-88)||(28021453-28021517)
chr8 (24-103)||(5424715-5424794)
chr8 (24-101)||(17073233-17073310)
chr8 (24-101)||(17574960-17575037)
chr8 (73-101)||(1580218-1580246)
chr8 (24-92)||(13916488-13916556)
[»] chr5 (8 HSPs)
chr5 (26-103)||(4727928-4728005)
chr5 (24-101)||(35040476-35040553)
chr5 (24-103)||(12545957-12546036)
chr5 (24-103)||(35040099-35040178)
chr5 (28-103)||(35040929-35041004)
chr5 (24-103)||(28793947-28794025)
chr5 (24-103)||(35781313-35781392)
chr5 (62-102)||(6538139-6538179)
[»] chr3 (13 HSPs)
chr3 (24-100)||(26863090-26863166)
chr3 (26-103)||(3942643-3942718)
chr3 (219-269)||(41830015-41830065)
chr3 (27-103)||(8707963-8708039)
chr3 (27-103)||(9059850-9059926)
chr3 (27-103)||(54981672-54981748)
chr3 (27-103)||(54981833-54981908)
chr3 (24-101)||(24485657-24485734)
chr3 (24-103)||(23027849-23027929)
chr3 (24-103)||(54356213-54356293)
chr3 (24-103)||(7433663-7433742)
chr3 (27-101)||(10333048-10333122)
chr3 (24-54)||(21388483-21388513)
[»] chr1 (12 HSPs)
chr1 (24-103)||(47794663-47794742)
chr1 (24-103)||(49243722-49243801)
chr1 (26-103)||(6941297-6941375)
chr1 (24-101)||(6844408-6844485)
chr1 (27-103)||(47795506-47795582)
chr1 (27-103)||(47795879-47795955)
chr1 (24-103)||(24705300-24705379)
chr1 (27-103)||(17054170-17054246)
chr1 (24-103)||(24686136-24686215)
chr1 (24-54)||(6941670-6941700)
chr1 (24-54)||(11981705-11981735)
chr1 (24-54)||(45807973-45808003)
[»] chr2 (10 HSPs)
chr2 (24-103)||(21479152-21479233)
chr2 (27-103)||(31667457-31667533)
chr2 (27-103)||(41347374-41347450)
chr2 (24-103)||(40662819-40662897)
chr2 (24-102)||(21479352-21479430)
chr2 (26-103)||(42676410-42676487)
chr2 (26-101)||(3256049-3256124)
chr2 (24-54)||(7495578-7495608)
chr2 (24-54)||(42679488-42679518)
chr2 (24-101)||(43968628-43968705)
[»] scaffold0016 (2 HSPs)
scaffold0016 (27-103)||(205190-205266)
scaffold0016 (24-103)||(106141-106220)
[»] chr4 (8 HSPs)
chr4 (24-103)||(27839033-27839112)
chr4 (26-103)||(660113-660190)
chr4 (26-103)||(19298589-19298666)
chr4 (27-103)||(42816047-42816124)
chr4 (24-103)||(7238960-7239039)
chr4 (24-103)||(29100767-29100846)
chr4 (31-103)||(41103944-41104016)
chr4 (24-92)||(42314492-42314560)
[»] chr6 (3 HSPs)
chr6 (24-91)||(21980864-21980931)
chr6 (24-90)||(20469392-20469458)
chr6 (26-103)||(33438609-33438686)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 46897963 - 46897713
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttcaaaa-gttggagactaaaact 122  Q
    |||||||||||||||||||||||||||||||||| | |||||||||  |||| |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  46897963 tccaaacaaactagattatttgtttaaaaaatgctatatttatcacgaaaaataaacacaaaatagattctgatttttcaaaaagttggagactaaaact 46897864  T
Q  123 tctaagagataaatttggatttggagactaaaacttttcaaaagttgttacttcaatttttgcaacatgtagaatggttggatcagaattctaatggttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46897863 tctaagagataaatttggatttggagactaaaacttttcaaaagttgttacttcaatttttgcaacatgtagaatggttggatcagaattctaatggttt 46897764  T
Q  223 gaaggccttcaagttatcactaactcttgcatcatctccaatgcatctctt 273  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46897763 gaaggtcttcaagttatcactaactcttgcatcatctccaatgcatctctt 46897713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 5801114 - 5801193
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| || | |||||||||||||||||||||||||||||||    
T  5801114 tccaaacaaactaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacacaaaatagattctaatttttca 5801193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 44434752 - 44434831
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||| ||||| | ||  ||||| || | |||||||||||||||||||||||||||||||    
T  44434752 tccaaacaaactaaattatttgttttaaaaaagtgatttttattacggtaaacaaacacaaaatagattctaatttttca 44434831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 24688861 - 24688934
Alignment:
Q  28 aacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| ||||||||||||||||||||    
T  24688861 aacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaatagattctaattttt 24688934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 24162244 - 24162323
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||||| |  |  ||||| || | |||||||  ||||||||||||| ||||||||    
T  24162244 tccaaacaaactagattatttgtttaaaaaaagttatttttattacggtaaacaaatgcaaaatagattctgatttttca 24162323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 11485979 - 11485899
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatag-attctaatttttca 103  Q
    ||||||||||||| ||||||||||||||||| |  |  |||||||| | |||||||| |||||||| |||| |||||||||    
T  11485979 tccaaacaaactaaattatttgtttaaaaaaagtaatttttatcacggtaaacaaacgcaaaatagaattcaaatttttca 11485899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 10282550 - 10282629
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||||  | ||  ||||| ||   ||||||||  |||||||||||| ||||||||    
T  10282550 tccaaacaaactagattatttgtttaaaaatagtgatttttattacgataaacaaacgaaaaatagattctgatttttca 10282629  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 24689362 - 24689332
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  24689362 tccaaacaaactagattatttgtttaaaaaa 24689332  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 35525928 - 35525898
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  35525928 tccaaacaaactagattatttgtttaaaaaa 35525898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 1644553 - 1644478
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||  | ||  ||| |||| | |||||||| ||||||||||| | ||||||||    
T  1644553 aaacaaactagattatttgtttaaaaag-gtgatttttttcacgggaaacaaacgcaaaatagattatgatttttca 1644478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 28974918 - 28974886
Alignment:
Q  71 gaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||| |||||||    
T  28974918 gaaaacaaacacaaaatagattctagtttttca 28974886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 35526500 - 35526468
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatg 56  Q
    ||||||||||||| |||||||||||||||||||    
T  35526500 tccaaacaaactaaattatttgtttaaaaaatg 35526468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 5765443 - 5765519
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| |||||||||||||||||||| | ||||||||    
T  5765443 aaacaaactagattatttgtttaaaaaatgtgatttttattacagtaaacaaacacaaaatagattttgatttttca 5765519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 35308207 - 35308286
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| ||||||||||| | ||||||||    
T  35308207 tccaaacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaatagattatgatttttca 35308286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 6007693 - 6007616
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||| ||||| ||||||||    
T  6007693 caaacaaactagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatacattctgatttttca 6007616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 15199751 - 15199674
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||| ||||||||||||||||| | ||  ||||| |||| ||||||||| ||||||| |||| ||||||||    
T  15199751 caaacaaactaaattatttgtttaaaaaaagtgatttttattacagtaaacaaacataaaatagtttctgatttttca 15199674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27917559 - 27917495
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 88  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| |||| ||||||| ||||||||    
T  27917559 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacagtaaacaaatacaaaata 27917495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27963978 - 27963914
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 88  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| |||| ||||||| ||||||||    
T  27963978 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacagtaaacaaatacaaaata 27963914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 5764904 - 5764825
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||  ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  5764904 tccaaacaaatcagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 5764825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 40796250 - 40796329
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||| |||||   ||  ||||||| || |||||||| | ||||||||||| ||||||||    
T  40796250 tccaaacaaactagattatttgttttaaaaaaatgatttttatcatagtaaacaaacgctaaatagattctgatttttca 40796329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 6008050 - 6007973
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||| |||||||||||||||| ||  ||||| ||   || ||||| ||||||||||||| ||||||||    
T  6008050 caaacaaactagataatttgtttaaaaaatgtgatttttattacgataagcaaacgcaaaatagattctgatttttca 6007973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 28828101 - 28828178
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    |||||||||| || ||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||    
T  28828101 tccaaacaaattaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgattttt 28828178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27881336 - 27881272
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 88  Q
    ||||||||||||||||||||||||||||||| | ||  |||||  ||| |||||||| |||||||    
T  27881336 tccaaacaaactagattatttgtttaaaaaaagtgatttttattgcagtaaacaaacgcaaaata 27881272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 28021517 - 28021453
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 88  Q
    ||||||||||||||||||||||||||||||| | ||  |||||  ||| |||||||| |||||||    
T  28021517 tccaaacaaactagattatttgtttaaaaaaagtgatttttattgcagtaaacaaacgcaaaata 28021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 5424794 - 5424715
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||||||||| |  |  ||||| |||  |||||||  ||||||||||||| ||||||||    
T  5424794 tccaaacaaactaaattatttgtttaaaaaaagttatttttattacactaaacaaaggcaaaatagattctgatttttca 5424715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 17073310 - 17073233
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||||||||| ||||||||||||| |  |  ||||| || | ||| |||| ||||||||||||| ||||||    
T  17073310 tccaaacaaactagattgtttgtttaaaaaaagtaaattttataacggtaaaaaaacgcaaaatagattctgattttt 17073233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 17574960 - 17575037
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||||||||| ||||||||||||| |  |  ||||| || | ||| |||| ||||||||||||| ||||||    
T  17574960 tccaaacaaactagattgtttgtttaaaaaaagtaaattttataacggtaaaaaaacgcaaaatagattctgattttt 17575037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 1580246 - 1580218
Alignment:
Q  73 aaacaaacacaaaatagattctaattttt 101  Q
    |||||||||||||||||||||||||||||    
T  1580246 aaacaaacacaaaatagattctaattttt 1580218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 13916556 - 13916488
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagatt 92  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| |  | |||||||| |||||||||||    
T  13916556 tccaaacaaactaaattatttgtttaaaaaacgtgatttttattatggtaaacaaacgcaaaatagatt 13916488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 4727928 - 4728005
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||| | ||  ||||| |||| |||||||| ||||||||||||| ||||||||    
T  4727928 caaacaaactagattatttgtttaaaaaaggtgatttttattacagtaaacaaacgcaaaatagattctgatttttca 4728005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 35040476 - 35040553
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||    
T  35040476 tccaaacaaactaaattatttgtttaaaaaacgtgatttttattacggtaaacaaacgcaaaatagattctgattttt 35040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 12545957 - 12546036
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||| |||||||||   ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  12545957 tccaaacaaactaaattatttatttaaaaaaaatgatttttattacggtaaacaaacacaaaatagattctgatttttca 12546036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 35040178 - 35040099
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||| |||||   ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  35040178 tccaaacaaactaaattatttgttttaaaaaaatgatttttattacggtaaacaaacacaaaatagattctgatttttca 35040099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 35041004 - 35040929
Alignment:
Q  28 aacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||| ||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  35041004 aacaaactagattatttgttttaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 35040929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 28794025 - 28793947
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||||||||| | ||  |||||| | | |||| ||||||||||||||| | ||||||||    
T  28794025 tccaaacaaactaaattatttgtttaaaaaaagtgatttttatcgcggtaaac-aacacaaaatagattttgatttttca 28793947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 35781392 - 35781313
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||| ||||||||| ||||||||||||| | ||  ||||| || | |||||||| ||||||||||| | ||||||||    
T  35781392 tccaaacgaactagattttttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattttgatttttca 35781313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 6538139 - 6538179
Alignment:
Q  62 tttatcacagaaaacaaacacaaaatagattctaatttttc 102  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  6538139 tttatcacggtaaacaaacacaaaatagattctgatttttc 6538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 26863090 - 26863166
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttt 100  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| |||| |||||||| |||| ||||||||||||||    
T  26863090 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacagtaaacaaacgcaaagtagattctaatttt 26863166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 3942643 - 3942718
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||| | ||  |||||  | | |||||||||||||||||||||| ||||||||    
T  3942643 caaacaaactagattatttgtttaaaaaaagtgatttttat--cggtaaacaaacacaaaatagattctgatttttca 3942718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 41830065 - 41830015
Alignment:
Q  219 gtttgaaggccttcaagttatcactaactcttgcatcatctccaatgcatc 269  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  41830065 gtttgaaggtcttccagttgtcactaactcttgcatcatctccaatgcatc 41830015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 8708039 - 8707963
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||| ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  8708039 aaacaaacaagattatttgtttaaaaaaggtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 8707963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 9059926 - 9059850
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||| ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  9059926 aaacaaacaagattatttgtttaaaaaaggtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 9059850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 54981672 - 54981748
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||| ||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  54981672 aaacaaactaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 54981748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 54981908 - 54981833
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  54981908 aaacaaactagattatttgtttaaaaaaggtga-ttttattactgtaaacaaacgcaaaatagattctgatttttca 54981833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 24485657 - 24485734
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||||| ||||||||||| ||||| |  |  ||||| || | |||||||||||||||||||||| ||||||    
T  24485657 tccaaacaaactaaattatttgttttaaaaaagtaatttttattacggtaaacaaacacaaaatagattctgattttt 24485734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 23027849 - 23027929
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaa-atgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||| |||||||| | ||||  ||||| || | ||||||||| |||||||||| | ||||||||    
T  23027849 tccaaacaaactagattatttctttaaaaataagcgatttttattacggtaaacaaacataaaatagattttgatttttca 23027929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 54356293 - 54356213
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaat-gcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| |||||||||||||||||  | ||  ||||| |  | |||||||||||||||||||||| ||||||||    
T  54356293 tccaaacaaactaaattatttgtttaaaaaaaagtgatttttattatggtaaacaaacacaaaatagattctgatttttca 54356213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 7433663 - 7433742
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||| ||||||||||||||| |||||   ||  ||||| |||| ||||||||  |||||||||||| ||||||||    
T  7433663 tccaaacaagctagattatttgttttaaaaaattgatttttattacagtaaacaaacgtaaaatagattctgatttttca 7433742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 10333122 - 10333048
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||||||| |||||||||||| | ||  ||||| ||   |||||||| ||||||||||||| ||||||    
T  10333122 aaacaaactagattacttgtttaaaaaaagtgatttttattacgctaaacaaacgcaaaatagattctgattttt 10333048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 21388483 - 21388513
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  21388483 tccaaacaaactagattatttgtttaaaaaa 21388513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 47794663 - 47794742
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| |||||||||| |||||| | ||| |||||||||  |||||||||||||||| ||||| ||||||||    
T  47794663 tccaaacaaactaaattatttgttaaaaaaaagtgacttttatcacaacaaacaaacacaaaataaattctgatttttca 47794742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 49243801 - 49243722
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||||| |  |  |||||||| | ||||||| |||||||||||||| ||||||||    
T  49243801 tccaaacaaactagattatttgtttaaaaaaagtaatttttatcacggtaaacaaatacaaaatagattctgatttttca 49243722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 6941375 - 6941297
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaat-gcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||||  | ||  |||||||| | |||||||||||||||||||||| ||||||||    
T  6941375 caaacaaactagattatttgtttaaaaaaaagtgatttttatcacggtaaacaaacacaaaatagattctgatttttca 6941297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 6844485 - 6844408
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||    
T  6844485 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgattttt 6844408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 47795506 - 47795582
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||   ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  47795506 aaacaaactagattatttgtttaaaaaaaatgatttttattacggtaaacaaacacaaaatagattctgatttttca 47795582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 47795955 - 47795879
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||| ||||||   ||  ||||| |||| |||||||||||||||||||||| ||||||||    
T  47795955 aaacaaactagattatttgttaaaaaaaaaagatttttattacagtaaacaaacacaaaatagattctgatttttca 47795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 24705300 - 24705379
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||| |||||| ||||||| | ||||||| | ||  |||||||||| |||||||||||||||||||||| ||||||||    
T  24705300 tccaaagaaactaaattatttttctaaaaaaagtgatttttatcacagtaaacaaacacaaaatagattctgatttttca 24705379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 17054246 - 17054170
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||  | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  17054246 aaacaaactagattatttgtttaaaaatagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 17054170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 24686215 - 24686136
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||||| |  |  ||||| || | ||||||||  |||||||||||| ||||||||    
T  24686215 tccaaacaaactagattatttgtttaaaaaaagttatttttattacggtaaacaaacgtaaaatagattctgatttttca 24686136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 6941670 - 6941700
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  6941670 tccaaacaaactagattatttgtttaaaaaa 6941700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 11981735 - 11981705
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  11981735 tccaaacaaactagattatttgtttaaaaaa 11981705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 45808003 - 45807973
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  45808003 tccaaacaaactagattatttgtttaaaaaa 45807973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 21479233 - 21479152
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacattt--atcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||||||    | ||||  ||||| | |||||||||||||||||||||||||||||||    
T  21479233 tccaaacaaactagattatttgtttaaaaaaaaaaagatttttatcacggtaaacaaacacaaaatagattctaatttttca 21479152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 31667533 - 31667457
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| ||||||||||||| ||||||||    
T  31667533 aaacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaatagattctgatttttca 31667457  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 41347374 - 41347450
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||| ||||| ||||||||||||| ||  |||||||| | |||||||| ||||||||||||| ||||||||    
T  41347374 aaacaaactaaattatatgtttaaaaaatgtgatttttatcacggtaaacaaacgcaaaatagattctgatttttca 41347450  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 40662819 - 40662897
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||| ||||||||| | ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  40662819 tccaaacaaactaaattatttatttaaaaaa-gtgatttttattactgtaaacaaacacaaaatagattctgatttttca 40662897  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 21479430 - 21479352
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttc 102  Q
    |||||||||||||||||||||||||| |||| | ||  |||| ||| | |||||||| ||||||||||||  |||||||    
T  21479430 tccaaacaaactagattatttgtttacaaaaagtgatttttaccacggtaaacaaacgcaaaatagattcccatttttc 21479352  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 42676487 - 42676410
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||| ||||||||||||| | ||  ||||| ||   |||||||| ||||||||||||| ||||||||    
T  42676487 caaacaaactagattttttgtttaaaaaaagtgatttttattacgataaacaaacgcaaaatagattctgatttttca 42676410  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 3256124 - 3256049
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||||||||| ||||||||||||||||| | ||  ||||| || | ||||||||| |||| ||||||| ||||||    
T  3256124 caaacaaactaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacaaaaaagagattctgattttt 3256049  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Complemental strand, 7495608 - 7495578
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  7495608 tccaaacaaactagattatttgtttaaaaaa 7495578  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 42679488 - 42679518
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaa 54  Q
    |||||||||||||||||||||||||||||||    
T  42679488 tccaaacaaactagattatttgtttaaaaaa 42679518  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 43968628 - 43968705
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 101  Q
    ||||| || ||||||||||||||||||||||   ||  |||||| | | |||||||| ||||||||||||| ||||||    
T  43968628 tccaagcacactagattatttgtttaaaaaaaatgatttttatcgcggtaaacaaacgcaaaatagattctgattttt 43968705  T

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Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 205266 - 205190
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||   ||  ||||| || | |||||||| ||||||||||||||||||||||    
T  205266 aaacaaactagattatttgtttaaaaaaaatgatttttattacggtaaacaaacgcaaaatagattctaatttttca 205190  T

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Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 106141 - 106220
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||| ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  106141 tccaaacaaacaagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 106220  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 27839033 - 27839112
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||| ||||| ||||||||    
T  27839033 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaataaattctgatttttca 27839112  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 660190 - 660113
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||||   ||  ||||| |  | |||||||| ||||||||||||||||||||||    
T  660190 caaacaaactagattatttgtttaaaaaaaatgatttttattaacgtaaacaaacgcaaaatagattctaatttttca 660113  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 19298589 - 19298666
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||| ||||||||||||||||| | ||  ||||||   | |||||||| ||||||||||||| ||||||||    
T  19298589 caaacaaactaaattatttgtttaaaaaaagtgatttttatcgtggtaaacaaacgcaaaatagattctgatttttca 19298666  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 42816047 - 42816124
Alignment:
Q  27 aaacaaactagattatttgtttaaaaaatgcg-acatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||||||||||||||||||     |  |||||||| | |||||||||||||||||||||| ||||||||    
T  42816047 aaacaaactagattatttgtttaaaaaaaaattatttttatcacggtaaacaaacacaaaatagattctgatttttca 42816124  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 7238960 - 7239039
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    |||||||||||||||||||||||||||||||   ||  ||||| || | |||||||  ||||||||||| | ||||||||    
T  7238960 tccaaacaaactagattatttgtttaaaaaaaatgatttttattacggtaaacaaatgcaaaatagattatgatttttca 7239039  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 29100846 - 29100767
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||||| ||||||||||| ||||| | ||  ||||| |||| |||||||| |||||  |||||| ||||||||    
T  29100846 tccaaacaaactaaattatttgttttaaaaaagtgagttttattacagtaaacaaacgcaaaaatgattctgatttttca 29100767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 41104016 - 41103944
Alignment:
Q  31 aaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||| |||||||||||||||||| | ||  ||| | || | |||||||||||||||||||| | ||||||||    
T  41104016 aaactggattatttgtttaaaaaaagtgatttttgttaccgtaaacaaacacaaaatagattttgatttttca 41103944  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 42314492 - 42314560
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagatt 92  Q
    ||||||||||||| ||||||| ||||||| | | ||  |||||||  | ||||||||||||||||||||    
T  42314492 tccaaacaaactaaattatttttttaaaataagtgatttttatcaaggtaaacaaacacaaaatagatt 42314560  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 21980931 - 21980864
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagat 91  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| || | |||||||||||||||||||    
T  21980931 tccaaacaaactacattatttgtttaaaaaaagtgatttttattacggtaaacaaacacaaaatagat 21980864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 20469392 - 20469458
Alignment:
Q  24 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaataga 90  Q
    ||||||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| |||||||||    
T  20469392 tccaaacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaataga 20469458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 33438686 - 33438609
Alignment:
Q  26 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 103  Q
    ||||||||||| ||||||||||||||||| | ||  ||||| |  | |||||||| ||||||| ||||||||||||||    
T  33438686 caaacaaactaaattatttgtttaaaaaaagtgatttttattatggtaaacaaacgcaaaataaattctaatttttca 33438609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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