View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19434_low_28 (Length: 237)

Name: NF19434_low_28
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19434_low_28
NF19434_low_28
[»] chr5 (4 HSPs)
chr5 (12-126)||(28203835-28203950)
chr5 (146-219)||(16104941-16105014)
chr5 (146-219)||(11583326-11583399)
chr5 (146-179)||(109777-109810)
[»] chr6 (5 HSPs)
chr6 (146-219)||(18824292-18824365)
chr6 (146-219)||(18840147-18840220)
chr6 (146-219)||(18582633-18582706)
chr6 (146-219)||(17084131-17084204)
chr6 (146-179)||(4990351-4990384)
[»] chr3 (6 HSPs)
chr3 (146-219)||(7853259-7853332)
chr3 (146-219)||(33341289-33341363)
chr3 (143-210)||(54652459-54652526)
chr3 (149-210)||(47785632-47785693)
chr3 (146-179)||(19945975-19946008)
chr3 (143-179)||(9591529-9591565)
[»] scaffold0120 (2 HSPs)
scaffold0120 (146-210)||(30461-30525)
scaffold0120 (146-219)||(18676-18749)
[»] chr4 (2 HSPs)
chr4 (146-219)||(16522127-16522200)
chr4 (146-219)||(7186644-7186717)
[»] scaffold0310 (1 HSPs)
scaffold0310 (146-219)||(1012-1085)
[»] scaffold0150 (2 HSPs)
scaffold0150 (146-219)||(21056-21129)
scaffold0150 (146-219)||(27885-27958)
[»] chr2 (2 HSPs)
chr2 (146-219)||(25212323-25212396)
chr2 (154-219)||(24827677-24827742)
[»] chr7 (1 HSPs)
chr7 (146-219)||(7284953-7285026)
[»] scaffold0028 (1 HSPs)
scaffold0028 (146-179)||(129835-129868)


Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 28203835 - 28203950
Alignment:
Q  12 gattatactggcacacgtaattcaaattgccctgatgatttggaagaatcacc-aaaaaggaaatttaaggctaagtgttgagagttttggggtgaaatt 110  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  28203835 gattattctgtcacacgtaattcaaattgccctgatgatttggaagaatcacccaaaaaggaaatttaaggctaagtgttaagagttttggggtgaaatt 28203934  T
Q  111 ctatggttgataatgt 126  Q
    ||||||||||||||||    
T  28203935 ctatggttgataatgt 28203950  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 16104941 - 16105014
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  16104941 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttctt 16105014  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 11583326 - 11583399
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| || |||||||||||| || ||||||||||||||||  |||||||    
T  11583326 tatttagttcacaaaagttcatttcgacaaaaacatcaaaattaccaagttacgacaagttcatatcatttctt 11583399  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 109810 - 109777
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatc 179  Q
    ||||||||||||||||||||||||||||| ||||    
T  109810 tatttagttcacaaaagttcattttgacaaaatc 109777  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 18824365 - 18824292
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  18824365 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttctt 18824292  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 18840220 - 18840147
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  18840220 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttctt 18840147  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 18582633 - 18582706
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||  |||||||    
T  18582633 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaagttacgacaagttcatatcatttctt 18582706  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 17084204 - 17084131
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||||  | ||| ||||||||||||  |||||||    
T  17084204 tatttaattcacaaaagttcatttcgacaaaattatcaaaattaccgagttatgacaagttcatatcatttctt 17084131  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 4990351 - 4990384
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatc 179  Q
    ||||||||||||||||||||||||||||| ||||    
T  4990351 tatttagttcacaaaagttcattttgacaaaatc 4990384  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 7853259 - 7853332
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  7853259 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttctt 7853332  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 33341289 - 33341363
Alignment:
Q  146 tatttagttcacaaaagttcattttgac-ataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  |||||||||||||||||||  |||||||    
T  33341289 tatttagttcacaaaagttcattttgacaaaaatcatcaaaattatcaaattacgacaagttcatatcatttctt 33341363  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 54652526 - 54652459
Alignment:
Q  143 tcttatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcata 210  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||||||||| |||||    
T  54652526 tcttatttagttcacaaaagttcgtttcgacaaaatcatcaaaattaccaagttacgacaagatcata 54652459  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 47785693 - 47785632
Alignment:
Q  149 ttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcata 210  Q
    ||||||||||||| ||||||| |||| ||||||||||||||| || ||||| ||||||||||    
T  47785693 ttagttcacaaaatttcatttcgacaaaatcatcaaaattaccaagttacggcaagttcata 47785632  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 19945975 - 19946008
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatc 179  Q
    ||||||||||||||||||||||||||||| ||||    
T  19945975 tatttagttcacaaaagttcattttgacaaaatc 19946008  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 9591565 - 9591529
Alignment:
Q  143 tcttatttagttcacaaaagttcattttgacataatc 179  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  9591565 tcttagttagttcacaaaagttcattttgacaaaatc 9591529  T

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Target: scaffold0120 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 30461 - 30525
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcata 210  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  30461 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcata 30525  T

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Target: scaffold0120; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 18676 - 18749
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||  |||||||    
T  18676 tatttagttcacaaaagttcatttcgacaaaatcatcacaattaccaaattacgacaagttcatatcatttctt 18749  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 16522127 - 16522200
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||  |||||||    
T  16522127 tatttagttcacaaaagttcatttggacaaaatcatcaaaattaccaaattacggcaagttcatatcatttctt 16522200  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 7186717 - 7186644
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    ||||||||| |||||||||||||| |||| ||||| ||||||||| || ||||||||||||||||  |||||||    
T  7186717 tatttagtttacaaaagttcatttcgacaaaatcaacaaaattaccaagttacgacaagttcatatcatttctt 7186644  T

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Target: scaffold0310 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 1085 - 1012
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||||||||  |||||||    
T  1085 tatttagtttacaaaagttcatttcgacaaaatcatcaaaattaccaagttacgacaagttcatatcatttctt 1012  T

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Target: scaffold0150 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 21056 - 21129
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||  |||||||    
T  21056 tatttagttcacaaaagttcatttcgacaaaatcataaaaattaccaagttacgacaagttcatatcatttctt 21129  T

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Target: scaffold0150; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 27885 - 27958
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||  |||||||    
T  27885 tatttagttcacaaaagttcatttcgacaaaatcataaaaattaccaagttacgacaagttcatatcatttctt 27958  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 25212323 - 25212396
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    ||||| |||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  25212323 tatttggttcacaaaagttcgtttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttctt 25212396  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 24827742 - 24827677
Alignment:
Q  154 tcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||  |||||||    
T  24827742 tcacaaaagttcatttcgacaaaatcatcaaaattaccgaattacgacaagttcatatcatttctt 24827677  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 7285026 - 7284953
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctt 219  Q
    |||||||||||||||| ||||||| |||| |||| |||||||||| || ||||||||||||||||  |||||||    
T  7285026 tatttagttcacaaaatttcatttcgacaaaatcgtcaaaattaccaagttacgacaagttcatatcatttctt 7284953  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 129835 - 129868
Alignment:
Q  146 tatttagttcacaaaagttcattttgacataatc 179  Q
    ||||||||||||||||||||||||||||| ||||    
T  129835 tatttagttcacaaaagttcattttgacaaaatc 129868  T

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