View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19434_low_3 (Length: 676)

Name: NF19434_low_3
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19434_low_3
NF19434_low_3
[»] chr5 (2 HSPs)
chr5 (13-663)||(33184394-33185044)
chr5 (509-545)||(22919832-22919868)
[»] scaffold0482 (3 HSPs)
scaffold0482 (13-201)||(733-921)
scaffold0482 (386-543)||(971-1118)
scaffold0482 (303-364)||(918-979)
[»] chr8 (9 HSPs)
chr8 (13-201)||(7790992-7791180)
chr8 (13-201)||(7811577-7811765)
chr8 (13-201)||(7774345-7774533)
chr8 (386-543)||(7774148-7774295)
chr8 (386-543)||(7790795-7790942)
chr8 (386-543)||(7811380-7811527)
chr8 (303-364)||(7811519-7811580)
chr8 (303-364)||(7774287-7774348)
chr8 (303-364)||(7790934-7790995)
[»] chr1 (2 HSPs)
chr1 (460-558)||(41147744-41147842)
chr1 (377-421)||(41147842-41147886)


Alignment Details
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Original strand, 33184394 - 33185044
Alignment:
Q  13 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  33184394 aatatcatcaagaactaatgaaccaagaatttcaatagcttcatcatagttttgttgtgtcacaccaaagcttccacggcaaaaaccataaccccaccta 33184493  T
Q  113 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacctacattaaacaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33184494 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgacctttttcttgaagcatcttcaactgcaatgtacctacattaaacaa 33184593  T
Q  213 tgtagccagataaacatcaactcataaataccagaaatgcaactatatactacatactatatgctataactaatatgaatgatttttatcaccttgctct 312  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184594 tgtagccagataaacatcaactcataaatacaagaaatgcaactatatactacatactatatgctataactaatatgaatgatttttatcaccttgctct 33184693  T
Q  313 aagattgatgcaaattctgtcccatagatccatgatttctctcccactaagaaatttggaaccaccttcaatgccattaagacataccaaatggccataa 412  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184694 aagattggtgcaaattctgtcccatagatccatgatttctctcccactaagaaatttggaaccaccttcaatgccattaagacataccaaatggccataa 33184793  T
Q  413 ccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatgccatccatcatccattgggattataaaat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33184794 ccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatgccacccatcatccattgggattataaaat 33184893  T
Q  513 ggtaccttctctttgatacaaaatgtccactccaacctatcaatcataaacataaccaaatcatataccattatcaatatcagcataaacccatttcagt 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184894 ggtaccttctctttgatacaaaatgtccactccaacctatcaatcataaacataaccaaatcatataccattatcaatatcagcataaacccatttcagt 33184993  T
Q  613 ttctaaattaataacagatccgaaaatccaaataacaaaataagttaaagt 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33184994 ttctaaattaataacagatccgaaaatccaaataacaaaataagttaaagt 33185044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 509 - 545
Target Start/End: Complemental strand, 22919868 - 22919832
Alignment:
Q  509 aaatggtaccttctctttgatacaaaatgtccactcc 545  Q
    |||||||||||||| |||||| |||||||||||||||    
T  22919868 aaatggtaccttctgtttgatgcaaaatgtccactcc 22919832  T

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Target: scaffold0482 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 733 - 921
Alignment:
Q  13 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  733 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccaccta 832  T
Q  113 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 201  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  833 ccaaaacaagagtgaccataagcaactcaatgaaataagcgaagatacactgaccttttccttgaagcatcttcaactgcaatgtacct 921  T

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Target: scaffold0482; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 386 - 543
Target Start/End: Original strand, 971 - 1118
Alignment:
Q  386 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||      
T  971 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat 1055  T
Q  484 ---ccatccatcatccattgggattataaaatggtaccttctctttgatacaaaatgtccact 543  Q
       ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1056 tgcccacccatcatccattgggattataaaatggtaccttctctatgatacaaaatgtccact 1118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 918 - 979
Alignment:
Q  303 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 364  Q
    ||||||||| ||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  918 accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 2e-85; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 7791180 - 7790992
Alignment:
Q  13 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7791180 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccaccta 7791081  T
Q  113 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 201  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7791080 ccaaaacaagagtgaccataagcaactcaatgaaataagcgaagatacactgaccttttccttgaagcatcttcaactgcaatgtacct 7790992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 7811765 - 7811577
Alignment:
Q  13 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7811765 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccaccta 7811666  T
Q  113 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 201  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  7811665 ccaaaacaagagtgaccataagcaactcaatgaaataagcgaagatacactgaccttttccttgaagcatcttcaactgcaatgtacct 7811577  T

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Target: chr8; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 7774533 - 7774345
Alignment:
Q  13 aatatcatcaagaactaatgaaccaagagtttcaatagcttcatcatagttttgttctgtcacaccaaagcttccacggcaaaaaccataaccccatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  7774533 aatatcatcaagaactaatgaaccaagagtttcaatagcttcattatagttttgttctgtcacaccaaagcttccacgacaaaaaccataaccccaccta 7774434  T
Q  113 ccaaaccaagagtgaccataagcaactccatgaagtaagcgaagatccattgaccttttccttgaagcatcttcaactgcaatgtacct 201  Q
    ||||| ||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7774433 ccaaaacaagagtgaacataagcaactcaatgaaataagcgaagatacattgaccttttccttgaagcatcttcaactgcaatgtacct 7774345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 386 - 543
Target Start/End: Complemental strand, 7774295 - 7774148
Alignment:
Q  386 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||      
T  7774295 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat 7774211  T
Q  484 ---ccatccatcatccattgggattataaaatggtaccttctctttgatacaaaatgtccact 543  Q
       ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7774210 tgcccacccatcatccattgggattataaaatggtaccttctctatgatacaaaatgtccact 7774148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 386 - 543
Target Start/End: Complemental strand, 7790942 - 7790795
Alignment:
Q  386 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||      
T  7790942 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat 7790858  T
Q  484 ---ccatccatcatccattgggattataaaatggtaccttctctttgatacaaaatgtccact 543  Q
       ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7790857 tgcccacccatcatccattgggattataaaatggtaccttctctatgatacaaaatgtccact 7790795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 386 - 543
Target Start/End: Complemental strand, 7811527 - 7811380
Alignment:
Q  386 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||      
T  7811527 ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat 7811443  T
Q  484 ---ccatccatcatccattgggattataaaatggtaccttctctttgatacaaaatgtccact 543  Q
       ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7811442 tgcccacccatcatccattgggattataaaatggtaccttctctatgatacaaaatgtccact 7811380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 7811580 - 7811519
Alignment:
Q  303 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 364  Q
    ||||||||||||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  7811580 accttgctctaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 7811519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 7774348 - 7774287
Alignment:
Q  303 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 364  Q
    ||||||||| ||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  7774348 accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 7774287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 7790995 - 7790934
Alignment:
Q  303 accttgctctaagattgatgcaaattctgtcccatagatccatgatttctctcccactaaga 364  Q
    ||||||||| ||||||| ||| ||||  || |||||||||||||||| |||||||| |||||    
T  7790995 accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga 7790934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 558
Target Start/End: Complemental strand, 41147842 - 41147744
Alignment:
Q  460 agcttcttcatttaagggtttatgccatccatcatccattgggattataaaatggtaccttctctttgatacaaaatgtccactccaacctatcaatca 558  Q
    |||||||||||||| |  |||||||||  |||  |||||||||||||| ||||| || |||||||||||| |||||||  | |||||||||| ||||||    
T  41147842 agcttcttcatttaggaatttatgccactcattgtccattgggattatgaaatgttaacttctctttgattcaaaatggtccctccaacctaacaatca 41147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 41147886 - 41147842
Alignment:
Q  377 ccttcaatgccattaagacataccaaatggccataaccattgcaa 421  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||    
T  41147886 ccttcaatgtcattaagacatatcaaatgaccataaccattgcaa 41147842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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