View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_30 (Length: 220)
Name: NF19434_low_30
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 56 - 203
Target Start/End: Original strand, 20981899 - 20982046
Alignment:
| Q |
56 |
aatggaatccaagggataaagctgcccatcacatccctctaatagtgacgcaaaatcttagcttcttctataaattcgcacatctcagcatgtagtttct |
155 |
Q |
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| T |
20981899 |
aatggaatccaagggataaagctgcccatcacatccctctaatggtgacgcaaaatcttagcttcttctataaattcgcacatctcagcatgtagtttct |
20981998 |
T |
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| Q |
156 |
tattcttggaagcctcgtcccttagcactggaatcttggccctccaat |
203 |
Q |
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| T |
20981999 |
tattcttggaaccctcgtcccttagcactggaatcttggccctccaat |
20982046 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10603527 - 10603581
Alignment:
| Q |
16 |
aatatccttgaattctaaatcattgttgaggagaatctgcaatggaatccaaggg |
70 |
Q |
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| T |
10603527 |
aatattctagaattctaaatcattgttgaggagaatgtgcaatggaatccaaggg |
10603581 |
T |
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