View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_6 (Length: 489)
Name: NF19434_low_6
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 234 - 470
Target Start/End: Original strand, 18542369 - 18542606
Alignment:
| Q |
234 |
atcaaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaat |
332 |
Q |
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| T |
18542369 |
atcaaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacgaaatcaagggccttcatgaaat |
18542468 |
T |
|
| Q |
333 |
ccagatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactctcttttattccttgtctaatctataatatgatgaacatca |
432 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18542469 |
ccagatgaatgaatgtgtctattcctttctattaagtatgtaaaataaaaccataaactctcttttattccttgtctagtctataatatgatgaacatca |
18542568 |
T |
|
| Q |
433 |
ttatttaaattagtttcttttaccattgtcctttgatt |
470 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |
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| T |
18542569 |
ttatctaaattagtttcttttaccattgtccttggatt |
18542606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 18542148 - 18542350
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatggagacccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggagga |
100 |
Q |
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| T |
18542148 |
agtttgtgaaatagaagaattcaaattaaaagtttcatggagacccccgggtggaagttggacaagccatggagtaaaaggaaagggtggtaaaggagga |
18542247 |
T |
|
| Q |
101 |
tcaaaaggtggatcaagcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaaggtggaaacgataaagaaagtgaacttg |
200 |
Q |
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| T |
18542248 |
tcaaaaggtggatcaggcacaggaggaaatggtagtgaaggaggtgcacaaggtggaggtgaacaaatcgaaggtggaaacgataaagaaagtgaacttg |
18542347 |
T |
|
| Q |
201 |
atg |
203 |
Q |
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||| |
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| T |
18542348 |
atg |
18542350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 18555430 - 18555575
Alignment:
| Q |
237 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
335 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18555430 |
aaataataaaataggttggggatatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaagggaatcaagggccttcatgaaatcca |
18555529 |
T |
|
| Q |
336 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaa |
381 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18555530 |
gatgaatgaacgtgtctattcctttccattaagtatgtaaaataaa |
18555575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 237 - 393
Target Start/End: Original strand, 18550452 - 18550609
Alignment:
| Q |
237 |
aaataataaaataggttggg-atatttgaaaaattgggaaggttacagtggtgacataagtagcaaaagtgaacggaatcaagggccttcatgaaatcca |
335 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||||| |
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| T |
18550452 |
aaataataatattggttggggatatttgaaaaattagggaggttacaattgtgacataagtagcaaaagtgaagggaatcaagagcctccatgaaatcca |
18550551 |
T |
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| Q |
336 |
gatgaatgaatgtgtctattcctttccattaagtatgtaaaataaaaccataaactct |
393 |
Q |
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||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||| |
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| T |
18550552 |
gatgaatgaatgtgtctattcattcccataaagcatgtaaaataaaaccataaactct |
18550609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 18555277 - 18555408
Alignment:
| Q |
73 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaatcgaa |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| | |
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| T |
18555277 |
agtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaggcacaggaggaaatggcggtgaaggaggtgcacaaggtggaggtagaaaaatcaga |
18555376 |
T |
|
| Q |
173 |
ggtggaaacgataaagaaagtgaacttgatgc |
204 |
Q |
| |
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||||||| || |||||||||| ||||||||| |
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| T |
18555377 |
ggtggaagtgacaaagaaagtggacttgatgc |
18555408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 18550295 - 18550430
Alignment:
| Q |
69 |
atggagtaaaaggaaagggtggtaaaggaggatcaaaaggtggatcaagcacaggaggaaatggcagtgaaggaggtgcacaaggtggaggtggacaaat |
168 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||| || |||| | |||||| ||||||||||||| |||||||||||||||||||| |
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| T |
18550295 |
atggagtaaaaggaaatggtggtaaaggaggatcaaagggtggatcaggctcaggcgaaaatggtggtgaaggaggtgcgcaaggtggaggtggacaaat |
18550394 |
T |
|
| Q |
169 |
cgaaggtggaaacgataaagaaagtgaacttgatgc |
204 |
Q |
| |
|
|||||||||||| || |||| ||||| ||||||||| |
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| T |
18550395 |
cgaaggtggaaaagacaaaggaagtggacttgatgc |
18550430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 373 - 470
Target Start/End: Original strand, 18555865 - 18555962
Alignment:
| Q |
373 |
taaaataaaaccataaactctcttttattccttgtctaatctataatatgatgaacatcattatttaaattagtttcttttaccattgtcctttgatt |
470 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| |
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| T |
18555865 |
taaaataaaaccataaactcttttttattccttgtctagtctataatatgatgaacatctttatctaaattagtttctttcaccattgtccttggatt |
18555962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18550227 - 18550267
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatgga |
41 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||| |
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| T |
18550227 |
agttggtgaaatagaagaattcaaatcaaaagtttcatgga |
18550267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18555205 - 18555245
Alignment:
| Q |
1 |
agtttgtgaaatagaagaattcaaattaaaagtttcatgga |
41 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
18555205 |
agttggtgaaatagaagaattcaaatcaaaagtttcatgga |
18555245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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