View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_7 (Length: 487)
Name: NF19434_low_7
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 472
Target Start/End: Complemental strand, 42253334 - 42252876
Alignment:
| Q |
14 |
ttcttttcaaaacttaattttgattcatctaaacggaggtaaaattcttctttacatnnnnnnngggaaagaaggagctaaaattgttgattgtactgct |
113 |
Q |
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| T |
42253334 |
ttcttttcaaaacttaattttgattcagctaaacggaggtaaaattcttctttacataaaaaaagggaaaggatgagctaaaattgttgattgtactgct |
42253235 |
T |
|
| Q |
114 |
gaacaaaaaattgggctttaaatatatgaaatggaaaatataggtgtgagagtaagacaagaacaataagcaactattttcctttttaaactataacgta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42253234 |
gaacaaaaaattgggctttaaatatatgaaatggaaaatataggtgtgagagtaagacaagaacaataagcaactattttcctttttaaactataacgta |
42253135 |
T |
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| Q |
214 |
gcaagaaaagatcaacnnnnnnntcaaaagaataaatcatgtgcatctgaattcacaaaataaaattttgaagataatgaagaaatcctgatttatttca |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42253134 |
gcaagaaaagatcaacaagaaaaacaaaagaataaatcatgtgcatctgaattcacaaaataaaattttgaagataatgaagaaatcctgatttatttca |
42253035 |
T |
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| Q |
314 |
tctaagtcacattgtcattgctagaccacatcattgaacattttctcaaaactttatacattattgaacaatgtcannnnnnnnnnnnnnnnnnnnnnnn |
413 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42253034 |
tccaagtcacattgtcattgctagaccacatcattgaacattttctcaaaactttatacattattgaacaatgtcatttttctttttgctttctttcttc |
42252935 |
T |
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| Q |
414 |
nagtcaattgatggaaaagctcctcttaagctgaagttgtttgatctttggaaggttct |
472 |
Q |
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| T |
42252934 |
tagtcaattgatcgaaaagctcctcttaagctgaagttgtttgatctttggaaggttct |
42252876 |
T |
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