View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19434_low_9 (Length: 456)
Name: NF19434_low_9
Description: NF19434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19434_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 441
Target Start/End: Complemental strand, 5676971 - 5676538
Alignment:
| Q |
9 |
gaagaatattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgcaatgtcagtaagcttt |
108 |
Q |
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| T |
5676971 |
gaagaagattgaaccaagacaagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgcaatgtcagtaagcttt |
5676872 |
T |
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| Q |
109 |
ctatctatgctgctacgtgcagcgatatatcttgatacaacagttgcttgcaggcttgatttggagaaaagaatggcaatgcaattaggacaagctgttt |
208 |
Q |
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| T |
5676871 |
ctatctatgctgctacgtgcagcgatatatcttgatacaacagttgcttgcaggcttgatttggagaaaagaatggcaatgcaattaggacaagctgttc |
5676772 |
T |
|
| Q |
209 |
tggatgatcttctcattccttcatattcatttaccggggacacgttattcgatgtggacacggttcaaaggatcatgaataattaccaagaatctcaaat |
308 |
Q |
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| T |
5676771 |
tggatgatcttctcattccttcatattcatttaccggggacacgttattcgatgtggacacggttcaaaggatcatgaataattaccaagaatctcaaat |
5676672 |
T |
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| Q |
309 |
tggaaatcactttgtctataatggtgatgatgaata-ttttctcctccacaaagtgatattgaacgggttggaaagctaatggaaaactatcttgctgaa |
407 |
Q |
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| T |
5676671 |
tggaaaccactttgtctataatggtgatgatgaatatttttctcctccacaaagtgatattgaacgggttggaaagctaatggaaaactatcttgctgaa |
5676572 |
T |
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| Q |
408 |
atagcaactgacaggaatttatcagttgcaaagt |
441 |
Q |
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| T |
5676571 |
atagcaactgacaggaatttatcagttgcaaagt |
5676538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 441
Target Start/End: Original strand, 39778875 - 39779276
Alignment:
| Q |
29 |
aagagcatgaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgcaatgtcagtaagctttctatctatgctgctacgtgc |
128 |
Q |
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|||||||||| ||||| |||||||||||| | |||||||||| | |||| |||||||||||||| || || |||||||| || | ||| || |
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| T |
39778875 |
aagagcatgagaagagacttattttagagatactagtgagccttatgccaagggagaagaatgcaatatctgtcagctttctttcactatggcttaaggc |
39778974 |
T |
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| Q |
129 |
agcgatatatcttgatacaacagttgcttgcaggcttgatttggagaaaagaatggcaatgcaattaggacaagctgttttggatgatcttctcattcct |
228 |
Q |
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| T |
39778975 |
agcaatatatcttgagacaactgttgcttgcaggtttgatttggagagaaggatagccatgcaattaggacaggctgttttggatgatcttctttttcc- |
39779073 |
T |
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| Q |
229 |
tcatattcatttaccggggacacgttattcgatgtggacacggttcaaaggatcatgaataattaccaagaatctcaaattggaaatcactttgtctata |
328 |
Q |
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| T |
39779074 |
-----ttcatttagcggcgacacatcgtttgatgtagaaacagtgcaaagaatcatgatgaattaccttgaatctgaagttgaaaatca------ttaca |
39779162 |
T |
|
| Q |
329 |
atggtgatgatgaatatt-ttctcctccacaaagtgatattgaacgggttggaaagctaatggaaaactatcttgctgaaatagcaactgacaggaattt |
427 |
Q |
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||| ||||||||||||| |||| |||| ||||| |||||| |||||||||||| || |||| | || |||||||||||||| ||||| || ||||| |
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| T |
39779163 |
atgcagatgatgaatattattcttctccccaaagggatatttttcgggttggaaagttattggagagttaccttgctgaaatagctactgatagaaattt |
39779262 |
T |
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| Q |
428 |
atcagttgcaaagt |
441 |
Q |
| |
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||||||| |||||| |
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| T |
39779263 |
atcagttccaaagt |
39779276 |
T |
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