View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19435_high_3 (Length: 301)
Name: NF19435_high_3
Description: NF19435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19435_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 41633517 - 41633234
Alignment:
| Q |
1 |
aacagaaaaatcaattagtaattgatgttaaacctcttatccttcaaagaagcaatggttccggcggcttctgctggcggaacatgtgaagacggcggcc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41633517 |
aacagaaaaatcaatcagtaattgatgttaaacctcttatccttcaaagaagcaatggttccggcggcttctgctggcggaacatgtgaagacggcggcc |
41633418 |
T |
|
| Q |
101 |
tcggtgaagcggaagaggaagcaggtgtggcaggtcttgaagaagtggatgaactcatgatagatggtggataccatgattgctgggatgaagcttcatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41633417 |
tcggtgaagcggaagaggaagcaggtgtagcaggtcttgaagaagtggatgaactcatgatagatggtgaataccatgattgctgggatgaagcttcatg |
41633318 |
T |
|
| Q |
201 |
tggttgttgctcttgtgatcccctgcgcgtaatcaacaacaaaagcaataaaatcaatatcaatattaacatcaaagttcttcc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41633317 |
tggttgttgctcttgtgatcccctgcgcgtaatcaacaacaaaagcaataaaatcaatatcaatattaacatcaaagttcttcc |
41633234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University