View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19435_low_4 (Length: 287)
Name: NF19435_low_4
Description: NF19435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19435_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 47338798 - 47338529
Alignment:
| Q |
1 |
tactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgt |
100 |
Q |
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| T |
47338798 |
tactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacgccttctttcttccctgtttcttcaaacaaaacatcttcaagtgt |
47338699 |
T |
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| Q |
101 |
ataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcctacatagtgc |
200 |
Q |
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| T |
47338698 |
ataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccgaatgattcaaagggtcctacatagtgc |
47338599 |
T |
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| Q |
201 |
ttaccgccggtttggattgacacatgtcggagattgggagcgtttggaatgactgcagtgaggacgtttt |
270 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47338598 |
ttaccgccggtttgaattgacacatgacggagattgggagcgtttggaatgactgcagtgaggacgtttt |
47338529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 3819079 - 3819348
Alignment:
| Q |
1 |
tactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3819079 |
tactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttacctgtttcttcaaacaaaacatcttcaagtgt |
3819178 |
T |
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| Q |
101 |
ataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcctacatagtgc |
200 |
Q |
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| T |
3819179 |
ataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccgaatgattcaaagggtcctacatagtgc |
3819278 |
T |
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| Q |
201 |
ttaccgccggtttggattgacacatgtcggagattgggagcgtttggaatgactgcagtgaggacgtttt |
270 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3819279 |
ttaccgccggtttgaattgacacatgacggagattgggagcgtttggaatgactgcagtgagggcgtttt |
3819348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 47349806 - 47349696
Alignment:
| Q |
2 |
actgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgta |
101 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||| |||||||| |||||||||||||| | |||||| | || |
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| T |
47349806 |
actgtaaggtgagaatccaaagatgagaaggggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatcttcctgagtg |
47349707 |
T |
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| Q |
102 |
taatagaaatt |
112 |
Q |
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| T |
47349706 |
taatagaaatt |
47349696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 47347263 - 47347157
Alignment:
| Q |
6 |
taaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatcttcaagtgtataat |
105 |
Q |
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||||||||||||||||| || | | || ||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| | || |||| |
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| T |
47347263 |
taaggtgaaaatccaaatataacttgaggtctatgaacagaccaactcaaaccctctttcttttgagtttcttcaaacaaaatatcttcctgagtgtaat |
47347164 |
T |
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| Q |
106 |
agaaatt |
112 |
Q |
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||||||| |
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| T |
47347163 |
agaaatt |
47347157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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