View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19436_high_3 (Length: 315)
Name: NF19436_high_3
Description: NF19436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19436_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 9662557 - 9662741
Alignment:
| Q |
82 |
aaatcacactgaaatg--gaatatgaaaattaaatatcgaatcaataaataagtttatctaatatgcacaaataaattagt-cttgtatcatgaacaagt |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
9662557 |
aaatcacactgaaatgctgaatatgaaaattatatatcgaatcaataaataaatttatctaatatgcacaaataaattagtacttttatcatgaataagt |
9662656 |
T |
|
| Q |
179 |
ttatttttcatctttggataataactctcatcatatttcatttgatccaatgataaaaccaattaatctagtggtataaatttat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9662657 |
ttatttttcatctttggataataactctcatcatatttcatttgttccaatggtaaaaccaattaatctagtggtataaatttat |
9662741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 14751287 - 14751335
Alignment:
| Q |
137 |
tctaatatgcacaaataaattagtcttgtatcatgaacaagtttatttt |
185 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
14751287 |
tctaatatgcacaattaaattagtcttccatcatgcacaagtttgtttt |
14751335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 36418229 - 36418177
Alignment:
| Q |
137 |
tctaatatgcacaaataaattagtcttgtatcatg-aacaagtttatttttca |
188 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||| ||||| ||||||||||| |
|
|
| T |
36418229 |
tctaatatgcacaaaaaaattagtattgtatgatgaaacaaatttatttttca |
36418177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University