View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19436_low_1 (Length: 528)
Name: NF19436_low_1
Description: NF19436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19436_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 86 - 510
Target Start/End: Complemental strand, 53431353 - 53430916
Alignment:
| Q |
86 |
cattgaacaagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgtt |
185 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431353 |
cattgaacaagaccaacaattctttttttgttagcccgatatcgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgtt |
53431254 |
T |
|
| Q |
186 |
ccaaaaggnnnnnnnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttctggccttgcaggaagcatcaaatctaaaaacc |
285 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
53431253 |
ccaaaaggaaaaaaaccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaacc |
53431154 |
T |
|
| Q |
286 |
ctacttggagtgcctccgcaattagatcagccatcatgacctcaggtatatctgtcaactc-------------aatgtatgtatgtaaatgtaatccta |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53431153 |
ctacttggagtgcctccgcaattagatcagccatcatgacctcaggtatatctgtcaactcaatttccctataaaatgtatgtatgtaaatgtaatccta |
53431054 |
T |
|
| Q |
373 |
tctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacacct |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431053 |
tctatcaactcataaattcctattttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacacct |
53430954 |
T |
|
| Q |
473 |
tatgactatggagcaggtgaaataacaccaactgaatc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
53430953 |
tatgactatggagcaggtgaaataacaccaactgaatc |
53430916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 89 - 325
Target Start/End: Original strand, 48374412 - 48374647
Alignment:
| Q |
89 |
tgaacaagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttcca |
188 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
48374412 |
tgaacaagaccaacaatactttctttgt-agcctgatattgcagcaccaggtgttaccattcttgcagcatggattggaaatgacgatgaaaatgttcca |
48374510 |
T |
|
| Q |
189 |
aaaggnnnnnnnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttctggccttgcaggaagcatcaaatctaaaaacccta |
288 |
Q |
| |
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|| || || | || ||||| ||||| | || ||||||||| |||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
48374511 |
aagggaaaaaagcccttgccgtataaacttgaaaccggaacttccatgtcatgcccacatgtttcgggccttgcaggtagcatcaaatctaggaacccta |
48374610 |
T |
|
| Q |
289 |
cttggagtgcctccgcaattagatcagccatcatgac |
325 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
48374611 |
cttggagtgcctctgcaatcagatcagccatcatgac |
48374647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 100 - 328
Target Start/End: Complemental strand, 53423684 - 53423456
Alignment:
| Q |
100 |
aacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnnn |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| || || ||| | | ||||||||||||| |
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| T |
53423684 |
aacaattctttcttttgtagcccgatattgcagcaccaggtgttgccattcttgcagcatcgattgctaataatgtaactgatgttccaaaagggaaaaa |
53423585 |
T |
|
| Q |
200 |
nccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttctggccttgcaggaagcatcaaatctaaaaaccctacttggagtgcc |
299 |
Q |
| |
|
||||||||||||||| || ||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| |
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|
| T |
53423584 |
gccatcaccatataactttaaatcagggacttctatgtcatgcccacatgtttcaggccttgcaggcagcattaaatctagaaaccctacttggagtgcc |
53423485 |
T |
|
| Q |
300 |
tccgcaattagatcagccatcatgacctc |
328 |
Q |
| |
|
|| ||||| ||||| |||||||||||||| |
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|
| T |
53423484 |
tctgcaatcagatcggccatcatgacctc |
53423456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 26095727 - 26095622
Alignment:
| Q |
228 |
acttccatggcatgtccacatgtttctggccttgcaggaagcatcaaatctaaaaaccctacttggagtgcctccgcaattagatcagccatcatgacct |
327 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
26095727 |
acttccatgtcatgcccacatgtttcaggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgacct |
26095628 |
T |
|
| Q |
328 |
caggta |
333 |
Q |
| |
|
| |||| |
|
|
| T |
26095627 |
ccggta |
26095622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 396 - 495
Target Start/End: Complemental strand, 53423068 - 53422969
Alignment:
| Q |
396 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat |
495 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 99 - 313
Target Start/End: Complemental strand, 53308435 - 53308221
Alignment:
| Q |
99 |
caacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggactggaaatgacacagaaaatgttccaaaaggnnnnn |
198 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||| ||| ||||| | ||||||||||||| |
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|
| T |
53308435 |
caacaattctttcttttgtagcctgatattgcagcaccaggtgttgccattcttgcatcatggattggtaatgatgtaactgatgttccaaaagggaaaa |
53308336 |
T |
|
| Q |
199 |
nnccatcaccatataacattgaatcagggacttccatggcatgtccacatgtttctggccttgcaggaagcatcaaatctaaaaaccctacttggagtgc |
298 |
Q |
| |
|
|| |||||||||||| || |||| |||||||| ||| |||| || |||||||| ||| ||||||| || || |||| ||||||||||| ||||||||| |
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|
| T |
53308335 |
agccctcaccatataactttaaatcggggacttctatgtcatgccctcatgtttcaggcgttgcaggcagaattaaatttaaaaaccctatttggagtgc |
53308236 |
T |
|
| Q |
299 |
ctccgcaattagatc |
313 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
53308235 |
ctctgcaatcagatc |
53308221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 398 - 508
Target Start/End: Complemental strand, 26095415 - 26095305
Alignment:
| Q |
398 |
tttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataa |
497 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| || | |||| |
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|
| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
|
| Q |
498 |
caccaactgaa |
508 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26095315 |
caacaactgaa |
26095305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 508
Target Start/End: Complemental strand, 53307870 - 53307758
Alignment:
| Q |
396 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat |
495 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||| |||||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
496 |
aacaccaactgaa |
508 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
53307770 |
aacaacaactgaa |
53307758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 510
Target Start/End: Original strand, 48374785 - 48374900
Alignment:
| Q |
395 |
ttttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaa |
494 |
Q |
| |
|
||||||| | || ||||||| ||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| || | |
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|
| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
495 |
taacaccaactgaatc |
510 |
Q |
| |
|
||||| ||| |||||| |
|
|
| T |
48374885 |
taacaacaattgaatc |
48374900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 26095824 - 26095755
Alignment:
| Q |
94 |
aagaccaacaattctttctttgttagcccgatattgcagcaccaggtgttaacattcttgcagcatggact |
164 |
Q |
| |
|
|||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
26095824 |
aagaccaaaaattctctctttgt-agcctgatattgcagcaccaggtgttaacattgttgcagcagggact |
26095755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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