View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19436_low_4 (Length: 294)
Name: NF19436_low_4
Description: NF19436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19436_low_4 |
 | |
|
| [»] scaffold0051 (2 HSPs) |
| | |
|
| [»] scaffold0014 (5 HSPs) |
| | |
|
| [»] scaffold0429 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold1840 (1 HSPs) |
| | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0652 (1 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
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| [»] scaffold0019 (1 HSPs) |
| | |
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| [»] scaffold0308 (1 HSPs) |
| | |
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| [»] scaffold0086 (1 HSPs) |
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|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 15864072 - 15864332
Alignment:
| Q |
11 |
caaaggtacaaagcaatgttcgaaatgaagtgcaaagcctgatagttggagtaatcgagaaatcatctcgccactattgatcctactttcagagaaatct |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15864072 |
caaaggcacaaagcaatgttcgaaatgaagtgcaaagcctgacagttggagtaatcgagaaatcttctcgccactattgatcctactttcagagaaatct |
15864171 |
T |
|
| Q |
111 |
tcaaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttt |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |
|
|
| T |
15864172 |
tcaaacgaaatgcttctttcaaatgaccaacaaagcataatccatagattagagaattgaaagtgactacatcaggaaaaattctctttacaatgatttt |
15864271 |
T |
|
| Q |
211 |
agactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcat |
279 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15864272 |
agactataactcataggaatcag--------ttatctttacacaaactaacgatgattgtgttgtgcat |
15864332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 112 - 279
Target Start/End: Original strand, 15727594 - 15727761
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||||| || |||| |||||||||||||| || || ||| ||| ||||||| || |||| | |
|
|
| T |
15727594 |
caaaccaaatgcttctttcaattgaccaacaatgcaaaatccgtaaattaaagaattgaaagtgataatattaggagaaattctctttgtaatcatttca |
15727693 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcat |
279 |
Q |
| |
|
|| ||||||||||||| |||||||| |||||||| ||||||||||||| ||||||| || |||||||| |
|
|
| T |
15727694 |
gaatataactcataggcatcagttacaaatttatgtttacacaaactatcaatgatcgtattgtgcat |
15727761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 16702444 - 16702598
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
16702444 |
caaactaaacgcttctttcaattgaccaacaatgcaaaatcaatagattagagaactgaaagtgacaacggtgggaggaattctctttacaatcatttct |
16702543 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatga |
266 |
Q |
| |
|
|| ||||| |||||| |||| ||| | ||||||||||||||||| | |||||| |
|
|
| T |
16702544 |
gaatataaaccataggcatcaattactagtttatctttacacaaaccatcaatga |
16702598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 281
Target Start/End: Complemental strand, 24941773 - 24941604
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| || || ||||| ||||||| | | ||||||||||||| ||||||| |||||| |||| |||| | |
|
|
| T |
24941773 |
caaacgaacagcttctttaaattgacccacaatacaaaagccatatattagagtagtataagtgacaacatctggaaaaattctcttaacaatcatttca |
24941674 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcatga |
281 |
Q |
| |
|
|| |||| ||| ||| || | ||| || |||||| || ||||||||| |||| ||||| |||| ||||| |
|
|
| T |
24941673 |
gaacataaatcagaggcatgaattacaagtttatccttgcacaaactatcaataattgtattgtacatga |
24941604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 30154073 - 30153916
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| || |||||||| |||||||| |||| ||| ||||||||||||| | |||||||||||| |||| ||| ||| | |||| |||| |||| | |
|
|
| T |
30154073 |
caaaccaactgcttcttcgaattgacccacaatgcaaaatccatagattaaactattgaaagtgacgacattaggataaattttcttaacaatcatttca |
30153974 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattg |
269 |
Q |
| |
|
|| ||||| ||||| | ||| ||| | |||||| ||||| |||||| ||||||||| |
|
|
| T |
30153973 |
gaatataaatcatacgcgtcaattacgagtttatccttacagaaactatcaatgattg |
30153916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 112 - 279
Target Start/End: Original strand, 43713 - 43880
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||| |||| | |
|
|
| T |
43713 |
caaaccaaatgcttctatcaattgaccaacaaagcaaaatccatagattaaagaattgaaagtgacaacatcaggagaaattttctttacaatcatttga |
43812 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcat |
279 |
Q |
| |
|
|| ||||||||||| | || || | ||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
43813 |
gaatataactcataagcctcggtcaccaatttctctttacacaaactatcaataattgtgttgtgcat |
43880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 50930 - 51089
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| ||| |||||||| |||||||| | ||||| ||||||| ||| ||| | ||||||||| |||| | |
|
|
| T |
50930 |
caaacaaaatgcttttttcagttgaccaacaatgcaaaatccatatattagagagctcaaagtaacaacataaggagaaaatttctttacaatcatttga |
51029 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtg |
271 |
Q |
| |
|
|| ||||||||||| | ||||| | |||| | ||||||||||||||| ||||||||||| |
|
|
| T |
51030 |
gaatataactcataagcctcagtcacaaatatctctttacacaaactatcaatgattgtg |
51089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 136947 - 136795
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||| | ||||| ||| |||| | |
|
|
| T |
136947 |
caaaccaaatgcttctttcaatcgaccaacaatgcaaaatccatagattagagaattgaaagtgacaacatcaggagaaattgtctttgcaatcatttca |
136848 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaat |
264 |
Q |
| |
|
|| ||||||||||| | |||| ||| || ||||||||||||||||||| |||| |
|
|
| T |
136847 |
gaatataactcataagcatcaattacaagtttatctttacacaaactatcaat |
136795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 139871 - 139704
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| || |||||||||||||||||| |||||||||||||||| ||| ||| | ||||| ||| |||| | |
|
|
| T |
139871 |
caaacgaaatgcatctttgaattgaccaacaatacaaaatccatagattagagaactgaaagtgacaacatcaggataaattttctttgcaatcatttca |
139772 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcat |
279 |
Q |
| |
|
|| |||||| |||||| |||| || ||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
139771 |
gaatataacccataggcatcaagtaccaatttatctttacacaaactatcaatgattgtattatgcat |
139704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 273
Target Start/End: Original strand, 105164 - 105325
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || ||||| ||||||| | | |||||||||||| ||| ||| | ||||| || |||| | |
|
|
| T |
105164 |
caaaccaaatgcttctttcaattgaccaacaatgcaaaacccataaattagagcactaaaagtgacaacagtaggagaaattttctttgtaatcatttca |
105263 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgtt |
273 |
Q |
| |
|
|| ||||||||||| | |||| ||| || ||||||||| ||||||||| |||||| |||||| |
|
|
| T |
105264 |
gagtataactcatatgcatcacttacaagtttatctttgcacaaactatcaatgactgtgtt |
105325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 121897 - 122053
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||| ||||||| ||| ||| | |||||| || |||| | |
|
|
| T |
121897 |
caaaccaaatgcttctttcaattgaccaacaatgcaaaatccatagattagagagctcaaagtaacaacattaggagaaattttctttagaatcatttga |
121996 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgatt |
268 |
Q |
| |
|
|| ||||||||||| | ||||| | ||||| ||||||||||| ||| | |||||| |
|
|
| T |
121997 |
gaatataactcataagcctcagtcaccaatttctctttacacaagctatcgatgatt |
122053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 138914 - 138866
Alignment:
| Q |
15 |
ggtacaaagcaatgttcgaaatgaagtgcaaagcctgatagttggagta |
63 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
138914 |
ggtacaaaacaatgtttaaaatgaagtgcaaagtctgatggttggagta |
138866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 5769 - 5602
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||| |||| | |
|
|
| T |
5769 |
caaaccaaatgcttctatcaattgaccaacaatgcaaaatccatagattaaagaattgaaagtgacaacatcaggagaaattttctttacaatcatttga |
5670 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcat |
279 |
Q |
| |
|
|| ||||||||||| | || || | ||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
5669 |
gaatataactcataagcctcggtcaccaatttctctttacacaaactatcaataattgtgttgtgcat |
5602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 3642610 - 3642463
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||| || |||| | |
|
|
| T |
3642610 |
caaaccaaatgcttctttcaattgaccaacaacgcaaaatcccaagattagagaattgaaagtgacaacatcgggagaaattctctttgtaatcatttca |
3642511 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaacta |
259 |
Q |
| |
|
|| ||||||| ||||| |||| ||| | ||||||||||||||||||| |
|
|
| T |
3642510 |
gaatataactgataggcatcacttacagctttatctttacacaaacta |
3642463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 273
Target Start/End: Complemental strand, 11990885 - 11990724
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| ||| |||||||| ||||||| | | |||||||||||||||||| ||| | | ||| ||| |||| | |
|
|
| T |
11990885 |
caaaccaaatgcttcttccagttgaccaacaatgcaaaatccataaattagagcactaaaagtgacaacatcgggagaaattttttttgcaatcatttga |
11990786 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgtt |
273 |
Q |
| |
|
|| ||||||||||||| |||| ||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
11990785 |
gaatataactcataggcatcaattaccaatttatgtttacacaaactatcaatgattgtgtt |
11990724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 16350623 - 16350464
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| || |||||||||||||||||| |||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
16350623 |
caaacgaaatgcatctttgaatttaccaacaatacaaaatccatagattagagaactgaaagtgacaacagtgggaggaattctctttacaatcatttct |
16350524 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtg |
271 |
Q |
| |
|
|| ||||| |||||| |||||||| | ||||||||||||||||| | ||||||||||| |
|
|
| T |
16350523 |
gaatataaaccataggcatcagttactagtttatctttacacaaaccatcaatgattgtg |
16350464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 26927 - 26768
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||| ||||||||||| | ||| |||||||||||||||| | | ||||| |||||||| ||| ||||| ||||||||| |||| | |
|
|
| T |
26927 |
caaaccaaatgcttctttgaattgaccaaccatgcaaaatccatagattagagcactaaaagttacaacatcaggagaaactttctttacaatcatttga |
26828 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtg |
271 |
Q |
| |
|
|| ||||||||||| | ||||| | ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
26827 |
gaatataactcataagcctcagtcactaatttctctttacacaaactatcaatgattgtg |
26768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1840 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1840
Description:
Target: scaffold1840; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 982 - 824
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| ||| ||||||| || |||| | |
|
|
| T |
982 |
caaaccaaatgcttctttgaattgaccaacaatgcaatatccatagattagagaattgagagtgacaacagtaggagaaattctctttgtaatcatttca |
883 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgt |
270 |
Q |
| |
|
|| ||||||||||| | |||| ||| || ||||||||| ||||||| | |||||||||| |
|
|
| T |
882 |
gaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaatgattgt |
824 |
T |
|
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Target: scaffold0572 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 2804 - 2646
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| ||| ||||||| || |||| | |
|
|
| T |
2804 |
caaaccaaatgcttctttgaattgaccaacaatgcaatatccatagattagagaattgagagtgacaacagtaggagaaattctctttgtaatcatttca |
2705 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgt |
270 |
Q |
| |
|
|| ||||||||||| | |||| ||| || ||||||||| ||||||| | |||||||||| |
|
|
| T |
2704 |
gaatataactcatatgcatcatttacaagtttatctttgcacaaaccatcaatgattgt |
2646 |
T |
|
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Target: scaffold0652 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 273
Target Start/End: Original strand, 5812 - 5973
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||| | |||||||| | ||||| |||||||| ||| ||| | ||||||||| |||| | |
|
|
| T |
5812 |
caaacaaaatgcttctttcagttgaccaacaatgcaaaatccaaatattagagagctcaaagtaacaacatcaggagaaattttctttacaatcatttga |
5911 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgtt |
273 |
Q |
| |
|
|| ||||||||||| | ||||| | ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
5912 |
gaatataactcataagcctcagtcaccaatttctctttacacaaactatcaatgattgtgtt |
5973 |
T |
|
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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 273
Target Start/End: Complemental strand, 41315842 - 41315681
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||| |||||||||||||||| || ||| |||||||| |||||||||||||||||| ||||||| ||| ||| | ||| | ||| |||| | |
|
|
| T |
41315842 |
caaaccaaatgcatctttcaattgaccaataatgcaaaatccatatattagagaattgaaagtggcaacatcaggagaaattttctctgcaatcatttca |
41315743 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgtt |
273 |
Q |
| |
|
|| ||||||||||| | |||| ||| || |||||||||||||||| | |||| |||||||| |
|
|
| T |
41315742 |
gaatataactcataagcatcatttacaagcttatctttacacaaaccatcaattattgtgtt |
41315681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 15603040 - 15603005
Alignment:
| Q |
238 |
aaatttatctttacacaaactaacaatgattgtgtt |
273 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15603040 |
aaatttatctttacacaaactatcaatgattgtgtt |
15603005 |
T |
|
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Target: scaffold0654 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 1646 - 1805
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||| |||||||| || |||| | | |||||||||||||||||| ||| ||||||| || |||| | |
|
|
| T |
1646 |
caaaccaaatgcttctttcagttgaccaacaatgcaaaatccataaatcagagcactaaaagtgacaacatcgggagaaattctctttgtaatcatttca |
1745 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtg |
271 |
Q |
| |
|
|| |||||| |||| | || || | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
1746 |
gaatataacacatatgcctcggtcaccaatttatctttacacaaactatcaatgattgtg |
1805 |
T |
|
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Target: scaffold0019 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 126549 - 126696
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||||||| || ||||| ||||||||||||| || |||||||| ||||||||||||||||||||||||| |||| ||| ||||||| || |||| | |
|
|
| T |
126549 |
caaacgaaacgcatctttgaattgaccaacaatacaaaatccataaattagagaattgaaagtgacaacattgggagaaattctctttgtaatcatttca |
126648 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaacta |
259 |
Q |
| |
|
|| |||||| |||| | || || | ||||||||||||||||||||| |
|
|
| T |
126649 |
gaatataacacatatgcctcggtcaccaatttatctttacacaaacta |
126696 |
T |
|
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Target: scaffold0308 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 273
Target Start/End: Complemental strand, 8568 - 8407
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| || |||||||||||||||||| |||||||||||||| ||| ||| | ||||| || |||| | |
|
|
| T |
8568 |
caaacgaaatgcatctttgaattgaccaacaatacaaaatccatagattagagaactgaaagtgacaacagtaggagaaattgtctttgtaatcatttca |
8469 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgtt |
273 |
Q |
| |
|
|| ||||||||||| | || || | ||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
8468 |
gaatataactcatatgcctcggtcaccaatttctctttacacaaactatcgatgattgtgtt |
8407 |
T |
|
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Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 31731 - 31793
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagt |
174 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
31731 |
caaaccaaatgcttctttgaattgaccaacaatgcaaaatccatggattagagaattgaaagt |
31793 |
T |
|
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 281
Target Start/End: Original strand, 44263019 - 44263188
Alignment:
| Q |
112 |
caaacgaaatgcttctttcaattgaccaacaaagcataatccatagattagagaattgaaagtgacaacatcgggaaaaactctctttacaaagatttta |
211 |
Q |
| |
|
||||| || ||||||||| |||||||| |||| || || |||| ||||||| | | ||||||||||||| ||||||| |||||| |||| |||| | |
|
|
| T |
44263019 |
caaaccaactgcttctttaaattgacccacaatacaaaagccatgtattagagtagtataagtgacaacatccggaaaaattctcttgacaatcatttca |
44263118 |
T |
|
| Q |
212 |
gactataactcataggaatcagttataaatttatctttacacaaactaacaatgattgtgttgtgcatga |
281 |
Q |
| |
|
|| |||| || ||| |||| |||||| ||||| ||| ||||||||| ||| ||||| |||| ||||| |
|
|
| T |
44263119 |
gaacataaagcagaggcatcaattataagtttatttttgcacaaactatgaataattgtattgtacatga |
44263188 |
T |
|
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