View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19437_low_1 (Length: 780)
Name: NF19437_low_1
Description: NF19437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19437_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 77 - 679
Target Start/End: Original strand, 480558 - 481152
Alignment:
| Q |
77 |
atgtcaaaatataccgtattatgcagagagaggaaggatcaatgcttaagtgatttcttcaacctaattgttaaaatatatattcaaaatgctctcgcaa |
176 |
Q |
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| T |
480558 |
atgtcaaaatataccgtattatgcagagagaggaaggatcaatgcttaagtgatttcttcaacctaattgttaaaatatatattcaaaatgctctcgcaa |
480657 |
T |
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| Q |
177 |
caattatgaaattttcaagcaagcatattctcatataaactaaaattataacatcccaattttgttaaataaaaacagtgacttttctacgaataaggcc |
276 |
Q |
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| T |
480658 |
caattatgaatttttcaagcaagcatattctcatataaattaaaattataacatcccaattttgttaaataaaaacggtgacttttctacaaataaggcc |
480757 |
T |
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| Q |
277 |
acgtttcgaatgagtatgaagtacttatttagttatgttctgaaatgagtattttaagcatttactctataagcatccttttcgatgcaacgaaactgtg |
376 |
Q |
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| T |
480758 |
acgtttcgaaagagtatgaagtacttatttagttatgttttgaaatgagtattttaagcatttactctataagcatccttttcgatgcaacgaaactgtg |
480857 |
T |
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| Q |
377 |
ttggtattagtatgtgtattcgaaggttgttttgatggaacgagatcgtgttggtattggtattggtatgtatattcaaaggttgtttgatattgtctta |
476 |
Q |
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| T |
480858 |
ttggtattagtatatgtattcgaaggttgttttgatggaacgagatcgtg------ttggtattggtatgtatattcgaaggttgtttgatgttgcctta |
480951 |
T |
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| Q |
477 |
aaccaaaaaagttatttggttttggctcgaacaatttagttttctcccatatattttatggatgagagggaaaagcgtatgattttttgggtcctttgaa |
576 |
Q |
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| T |
480952 |
aaccaaaaaagttatttggtgttggctcgaacaatttagttttctcccatatattttatggatgagaggg--aagcgtatgatttgttgggtcctttgaa |
481049 |
T |
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| Q |
577 |
tttaatttgttgtcttcagctgaacaatgttgattttgaactttattttaagtggattctttatagttttcttctctcacattcatagacgactatgttg |
676 |
Q |
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| T |
481050 |
tttaatttgttgtcttcagctgaacaatgttgattttgaactttattttaagtggattcttgataattttcttctctcacattcatagacgactatgttg |
481149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 730 - 774
Target Start/End: Original strand, 481151 - 481195
Alignment:
| Q |
730 |
ttgcgaacacctttgcttaattgatatatcttcagtaatattctt |
774 |
Q |
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| T |
481151 |
ttgcgaacacctttgcttaattgatatatcttcagtaatattctt |
481195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 480320 - 480360
Alignment:
| Q |
18 |
tgttaacgttgcacgtaaacaaatgaaagtacatactgttt |
58 |
Q |
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| T |
480320 |
tgttaacgttgcacgtaaacaaatgaaagtacatagtgttt |
480360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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