View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19437_low_3 (Length: 524)
Name: NF19437_low_3
Description: NF19437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19437_low_3 |
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| [»] scaffold0603 (1 HSPs) |
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| [»] scaffold1301 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 144 - 509
Target Start/End: Original strand, 4184331 - 4184706
Alignment:
| Q |
144 |
actctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtga---cttcatcggcaagttccaggccacgaagcttgacgtttcg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4184331 |
actctgctcactctcaacttctgtgaaggtgctgttagacaagattgtttctagtgagtacttcatcggcaagttccaggccacgaagcttgacgtttca |
4184430 |
T |
|
| Q |
241 |
ct---cttggaaaagcttaagacaatacttatggttcttcatgaagctgtggagacacttactttaaggctttgtcgacaactttggctgaatatgctgg |
337 |
Q |
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| T |
4184431 |
ctactcttggaaaagcttaagacaatacttatggttcttcatgaagctgtggagacacttactttaaggctttgtcgacaactttggctgaatatgctgg |
4184530 |
T |
|
| Q |
338 |
aatat----gttgtatttgaactctacaattgctcttgctccatagattattttaacaatatccaactgttgtaacaagatggaccaagcgttacgaaca |
433 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4184531 |
aatatatatgttgtatttgaactctacaattgctcttgctccaaagattattttaacaatatccaactgttgtaacaagatggaccaagcgttacgaaca |
4184630 |
T |
|
| Q |
434 |
tgcttatgaactttaaggaaaatggttattaaagtaatacttaaatgacttaagacaataatttgaatgaacaaga |
509 |
Q |
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| T |
4184631 |
tgcttatgaactttaaggaaaatggttattaaagtaatacttaaatgacttaagacaataatttgaatgaacaaga |
4184706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 5964916 - 5965060
Alignment:
| Q |
122 |
tggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggcaagttccaggc |
221 |
Q |
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|||||||| ||||| | |||||||| |||||||||| |||||||||||||| ||||| |||||| |||||||||| | ||| ||| ||| ||||| |
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| T |
5964916 |
tggttgatgaatctcctatacaactcgtctcactctcagcttctgtgaaggtgttgttaaacaagattgtttctagtcagttcgtcgacaacttccacag |
5965015 |
T |
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| Q |
222 |
cacgaagcttgacgtttcgctcttggaaaagcttaagacaatact |
266 |
Q |
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||| || ||||| ||||| |||||||||||||||||||||||||| |
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| T |
5965016 |
cactaaacttgatgtttcactcttggaaaagcttaagacaatact |
5965060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 5964819 - 5964882
Alignment:
| Q |
19 |
ttgcaaaaattaattgaaaaattagaaggcttgagttcgggagaacatgtaggtgaattaggtg |
82 |
Q |
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|||| |||||||||||||||||| ||||||| |||||| |||||||| ||||| ||||||||| |
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| T |
5964819 |
ttgcgaaaattaattgaaaaatttgaaggctggagttctggagaacagctaggtaaattaggtg |
5964882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 5965344 - 5965376
Alignment:
| Q |
10 |
aattctaaattgcaaaaattaattgaaaaatta |
42 |
Q |
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| T |
5965344 |
aattctaaattgcaaaaattaattgaaagatta |
5965376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0603 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: scaffold0603
Description:
Target: scaffold0603; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 10 - 311
Target Start/End: Complemental strand, 5840 - 5530
Alignment:
| Q |
10 |
aattctaaattgcaaaaattaattgaaaaattagaag---gcttgagttcgggagaacatgtaggtgaattaggtgttttcaaaagtgattggaatcaaa |
106 |
Q |
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||||||||||||| | |||||||||||| |||||||| | ||||||||||||||||| || || ||||| ||||||||||||||||||| || || |
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| T |
5840 |
aattctaaattgcgagaattaattgaaagattagaagaaggattgagttcgggagaacaggttggcaaattaaatgttttcaaaagtgattggtatggaa |
5741 |
T |
|
| Q |
107 |
ttcctcctaaa---gatttggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgactt |
203 |
Q |
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|||| | || | ||||||||||||||||| ||||||| ||| ||||||||||| ||||||| |||||||| |||||| ||||||||||||||| |
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| T |
5740 |
ctcctacaaattctgttttggttgataaatcttctctacaattctactcactctcaatttctgtgtcactgctgttaaacaagattgtttctagtgactt |
5641 |
T |
|
| Q |
204 |
catcggcaagttccaggccacgaagcttgacgtttcgctcttggaaaagcttaagacaatacttatg---gttcttcatgaagctgtggagacacttact |
300 |
Q |
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||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || ||||||| ||| ||||| || | ||||||| |
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| T |
5640 |
catcggcaacttccaggccatgaagcttgacgtttcactcttggaaaagcttaagacaatacttgtgcccgttcttcttgatgctgtagacatacttact |
5541 |
T |
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| Q |
301 |
ttaaggctttg |
311 |
Q |
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|| ||||||| |
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| T |
5540 |
ttcgggctttg |
5530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 410 - 509
Target Start/End: Complemental strand, 29251153 - 29251054
Alignment:
| Q |
410 |
aagatggaccaagcgttacgaacatgcttatgaactttaaggaaaatggttattaaagtaatacttaaatgacttaagacaataatttgaatgaacaaga |
509 |
Q |
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|||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |
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| T |
29251153 |
aagatggaccaagctttatgaagatgcttatgaacttaaaggaaaatggttattagacgaatacttaaatgacttaagacaataatttggatgaacaaga |
29251054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 5988020 - 5988056
Alignment:
| Q |
9 |
taattctaaattgcaaaaattaattgaaaaattagaa |
45 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
5988020 |
taattctaaattgcaaaaattaattgaaagattagaa |
5988056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1301 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1301
Description:
Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 566 - 514
Alignment:
| Q |
154 |
ctctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcat |
206 |
Q |
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|||||||||| |||||| ||| ||||| |||||| |||||||||||| ||||| |
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| T |
566 |
ctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat |
514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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