View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19437_low_4 (Length: 416)
Name: NF19437_low_4
Description: NF19437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19437_low_4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 3216115 - 3216514
Alignment:
| Q |
17 |
ggataaaccagcagagtaacttacaagtgcagcaggtagattgtcttgaacatcggattttggatcaaaaccttgaagtttactattcatgaggatcatg |
116 |
Q |
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| T |
3216115 |
ggataaaccagcagagtaacttacaagtgcagcaggtagattgtcttgaacatcggattttggatcaaaaccttgaagtttactattcatgaggatcatg |
3216214 |
T |
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| Q |
117 |
gcagatccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttct |
216 |
Q |
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| T |
3216215 |
gcagatccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttct |
3216314 |
T |
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| Q |
217 |
tcatggaaataggaccacaaaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttg |
316 |
Q |
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| T |
3216315 |
tcatggaaataggaccacaaaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttg |
3216414 |
T |
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| Q |
317 |
aaacactgattctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcggttgtgctagcaccaacagttagaatccatggt |
416 |
Q |
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| T |
3216415 |
aaacactgattctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcagttgtgctagcaccaacagttagaatccatggt |
3216514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 123 - 416
Target Start/End: Original strand, 3208282 - 3208575
Alignment:
| Q |
123 |
ccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttcttcatgg |
222 |
Q |
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| T |
3208282 |
ccaccggcatctttaactgcttgacctttggctactcttccaacaaacccaccttgctcacacacaactatttttcccttaacatcaaccttcttcatgg |
3208381 |
T |
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| Q |
223 |
aaataggaccacaaaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacac |
322 |
Q |
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| T |
3208382 |
caataggaccacaaaaggcaatggaatcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaac |
3208481 |
T |
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| Q |
323 |
tgattctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcggttgtgctagcaccaacagttagaatccatggt |
416 |
Q |
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| T |
3208482 |
tgattctccaagatattctgtcccgtcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggt |
3208575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 123 - 416
Target Start/End: Original strand, 3202308 - 3202601
Alignment:
| Q |
123 |
ccaccagcgtctttaactgcttgagctttcgctgcttgtgaaacaagtccaccttcctcacacaaaactacctttcccttaacatcaatgttcttcatgg |
222 |
Q |
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| T |
3202308 |
ccaccagcatctttaactgcttgacctttggctactctttcaaccgatccatcttgctcacacactactacctttcccttaacatcaacattctccatgg |
3202407 |
T |
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| Q |
223 |
aaataggaccacaaaaggcaatggaattatcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacac |
322 |
Q |
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| T |
3202408 |
aaaaaggattacaaaaggcaatgaaatcatcacttgtgttaattgcacctgcatacacaagtggcaataatgttgatgcaaagtcttttggttggaaaac |
3202507 |
T |
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| Q |
323 |
tgattctccaatatatttttccccgttgccaagtttagctattgcttctatttttctatcggttgtgctagcaccaacagttagaatccatggt |
416 |
Q |
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| T |
3202508 |
tgattctccgagatattccgtcccatccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggt |
3202601 |
T |
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