View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19437_low_5 (Length: 400)

Name: NF19437_low_5
Description: NF19437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19437_low_5
NF19437_low_5
[»] chr1 (10 HSPs)
chr1 (13-385)||(2569000-2569379)
chr1 (173-345)||(29119324-29119495)
chr1 (175-345)||(32676136-32676305)
chr1 (196-345)||(8462129-8462276)
chr1 (248-345)||(8809715-8809811)
chr1 (251-345)||(25161309-25161402)
chr1 (173-264)||(46435465-46435556)
chr1 (284-345)||(46435563-46435624)
chr1 (311-344)||(16679835-16679868)
chr1 (252-335)||(3688917-3689000)
[»] chr7 (7 HSPs)
chr7 (188-345)||(35341536-35341692)
chr7 (173-345)||(48250154-48250327)
chr7 (173-321)||(32694570-32694717)
chr7 (173-346)||(31306868-31307046)
chr7 (173-240)||(48072491-48072558)
chr7 (189-240)||(40856949-40857000)
chr7 (281-345)||(40856392-40856456)
[»] chr5 (14 HSPs)
chr5 (173-340)||(33858538-33858704)
chr5 (173-345)||(11607534-11607705)
chr5 (173-345)||(19357262-19357432)
chr5 (173-329)||(33271630-33271785)
chr5 (177-345)||(1826259-1826426)
chr5 (248-345)||(38010689-38010785)
chr5 (209-345)||(39570079-39570214)
chr5 (248-345)||(13015381-13015477)
chr5 (248-345)||(29989962-29990058)
chr5 (274-345)||(13086753-13086824)
chr5 (248-345)||(9827788-9827884)
chr5 (248-345)||(13478120-13478216)
chr5 (196-290)||(42148201-42148294)
chr5 (196-240)||(25482742-25482786)
[»] chr2 (10 HSPs)
chr2 (173-345)||(34392081-34392252)
chr2 (173-331)||(23863803-23863958)
chr2 (189-342)||(7381695-7381846)
chr2 (173-345)||(37357917-37358092)
chr2 (177-295)||(4779635-4779752)
chr2 (248-345)||(21603959-21604055)
chr2 (180-345)||(4775634-4775799)
chr2 (173-234)||(21606149-21606210)
chr2 (173-294)||(25275622-25275741)
chr2 (297-344)||(34904304-34904351)
[»] chr3 (17 HSPs)
chr3 (173-332)||(37742738-37742896)
chr3 (177-345)||(44380254-44380421)
chr3 (170-341)||(33509684-33509854)
chr3 (198-345)||(47426350-47426496)
chr3 (248-344)||(50934501-50934596)
chr3 (248-345)||(47186175-47186271)
chr3 (277-343)||(32319468-32319534)
chr3 (248-345)||(31187145-31187241)
chr3 (279-345)||(10179868-10179934)
chr3 (248-345)||(42664673-42664769)
chr3 (175-337)||(35094554-35094717)
chr3 (279-345)||(10018671-10018737)
chr3 (248-345)||(34029366-34029462)
chr3 (274-343)||(39498769-39498838)
chr3 (279-345)||(10123211-10123277)
chr3 (173-225)||(19619217-19619269)
chr3 (180-322)||(17466296-17466437)
[»] chr4 (16 HSPs)
chr4 (173-345)||(12473704-12473875)
chr4 (173-345)||(12528113-12528284)
chr4 (177-345)||(35869575-35869742)
chr4 (177-345)||(51811914-51812081)
chr4 (188-345)||(21260794-21260950)
chr4 (181-345)||(22343337-22343500)
chr4 (193-344)||(33249394-33249544)
chr4 (173-345)||(55590482-55590642)
chr4 (250-344)||(52910126-52910219)
chr4 (248-345)||(52012778-52012874)
chr4 (273-344)||(34829182-34829253)
chr4 (286-341)||(49998486-49998541)
chr4 (248-345)||(9799438-9799534)
chr4 (248-344)||(49999663-49999758)
chr4 (177-240)||(1796654-1796717)
chr4 (177-232)||(35781021-35781076)
[»] chr8 (7 HSPs)
chr8 (177-345)||(41179567-41179734)
chr8 (173-345)||(24337830-24338001)
chr8 (173-345)||(11254028-11254198)
chr8 (199-337)||(4708333-4708470)
chr8 (248-338)||(18168392-18168481)
chr8 (248-338)||(18631949-18632038)
chr8 (248-345)||(1514803-1514899)
[»] chr6 (7 HSPs)
chr6 (177-344)||(1211848-1212014)
chr6 (173-345)||(5403876-5404047)
chr6 (173-345)||(32644838-32645007)
chr6 (280-345)||(11753167-11753232)
chr6 (248-345)||(34245567-34245663)
chr6 (173-217)||(10503259-10503303)
chr6 (273-344)||(11113557-11113628)
[»] scaffold0519 (1 HSPs)
scaffold0519 (173-345)||(11195-11365)
[»] scaffold0229 (1 HSPs)
scaffold0229 (173-344)||(13005-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (173-345)||(34194-34363)
[»] scaffold0263 (1 HSPs)
scaffold0263 (248-344)||(23174-23263)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 385
Target Start/End: Complemental strand, 2569379 - 2569000
Alignment:
Q  13 catcatgtaatataattggaaacca--gtgtgatttttgttctcttatctaattattaattggtttctcttttgccttttttatataaataccaatatta 110  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||     
T  2569379 catcatgtaatataattggaaaccatagtgtgatttttgttctcttatctaattattaattggtttctcttttgccttttttctataaataccactattt 2569280  T
Q  111 nnnnnnnnatgagtcaagcaagagcatgcaaagac----------gttccaacatccaaagtacgctgacaaatagcacttgtgtaacataatgatatat 200  Q
            |||||| ||||||||||||||||||||          |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  2569279 ttttttttatgagtgaagcaagagcatgcaaagacatcaaattaagttccaacatccaaagtacgctgacggatagcacttgtgtaacataatgatatat 2569180  T
Q  201 accattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaat 300  Q
    || |||| | |||||||||||| |||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  2569179 actattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcatt-ggtaatgtaacattggtaggtggcacactctaat 2569082  T
Q  301 tggcaaatgatatatatcattggtaccttaatggtacacaagtgggcttaataatcatctacaacatgctcaaaaatgttattaa 385  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||    
T  2569081 tggcaaatgatatataccattggtaccttaatggtacacaagtgggctcaata---atctacaacatgctcaaaaatgttattaa 2569000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||| ||||||| ||||| | ||||||| |||| |||||||||||||| ||  |||||||||||||       ||||||||||||||||| |  |||     
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatcta-taaa 29119422  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||| || ||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  29119423 gtaacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 175 - 345
Target Start/End: Complemental strand, 32676305 - 32676136
Alignment:
Q  175 agcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgt 274  Q
    |||| |||||||  |||||| |||||||||||||||||||||| |||| ||  |||||||  ||||       |||||||||||||||||||  ||| ||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcattta-taaagt 32676207  T
Q  275 aacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||||  || | |||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  32676206 aacattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 32676136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 196 - 345
Target Start/End: Complemental strand, 8462276 - 8462129
Alignment:
Q  196 tatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacact 295  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||       ||||| ||||||| |||||  |||  ||||||||||||||||||||||    
T  8462276 tatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacattta-taaaataacattggtaggtggcacact 8462178  T
Q  296 gtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
     ||||||   ||||||||||| ||||||||| |||||  |||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtgg 8462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacattta-taaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 25161402 - 25161309
Alignment:
Q  251 atcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||| |||||  ||| ||||||||| |||||||||||||||||||||  |||| |||||| |||||  || ||||||||||||||||||    
T  25161402 atcaaataaaacattta-taaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtgg 25161309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 46435465 - 46435556
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcat 264  Q
    |||| ||||||||| ||||||| |||||||||||| |||||||||||||||||  || ||||||||||       |||||||||||||||||    
T  46435465 ataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcat 46435556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 46435563 - 46435624
Alignment:
Q  284 aggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||| | |||| |||||||| |||  |||||| ||||||||||||||||||||||||||||    
T  46435563 aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 16679835 - 16679868
Alignment:
Q  311 tatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||| |||||||||||||||||||||||||||    
T  16679835 tatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 3688917 - 3689000
Alignment:
Q  252 tcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcatt-ggtaccttaatggt 335  Q
    ||||||||| |||||  ||| ||||||||||||||| | ||||| |||||||  |||||||||||| ||| |||| |||||||||    
T  3688917 tcaaataaaacattta-taaagtaacattggtaggttgtacactctaattggtcaatgatatatattattgggtatcttaatggt 3689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 188 - 345
Target Start/End: Complemental strand, 35341692 - 35341536
Alignment:
Q  188 cataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggt 287  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||    
T  35341692 cataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattta-taaagtaacattggtaggt 35341594  T
Q  288 ggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||    
T  35341593 ggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtgg 35341536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 48250327 - 48250154
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatg--gcacaccctttnnnnnnntatatcaaataaagcatttggta 270  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||  ||| |||||||        |||||||||||||||| |  ||    
T  48250327 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatcta-ta 48250229  T
Q  271 atgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    | ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  48250228 aagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 32694570 - 32694717
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    ||||||||||||||  |||||| |||||||||||| | |||||||||||||||| |||||||||||||       |||||||||||||| ||||  |||     
T  32694570 atagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaattt-ataaa 32694668  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcatt 321  Q
    ||||||||| ||| ||| ||||| |||||  | |||| |||||||||||    
T  32694669 gtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 346
Target Start/End: Original strand, 31306868 - 31307046
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccct-----ttnnnnnnntatatcaaataaagcatttg 267  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||||||  |||||| |||| |||     ||       |  ||||||||||||||||     
T  31306868 atagcatttgtgtaccataatgatatatatcattgtccaattagaatgtaccacatgacacatcctataatttatttattttcatcaaataaagcattta 31306967  T
Q  268 gtaatgtaacattggtaggtggcacactgtaa-ttggcaaatgatatatatcattggtaccttaatggtacacaagtggg 346  Q
     ||| ||||||||||||||| ||||||| ||| ||||  ||||||||||||||||| ||| |||||||||||||| ||||    
T  31306968 -taaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaaatggg 31307046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 48072558 - 48072491
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||| ||| |||||||||||||    
T  48072558 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacacccttt 48072491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  189 ataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| |||||| |||||||||||||||||||||||  |||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  281 ggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||| |||||| ||||||   ||| |||||||||||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 173 - 340
Target Start/End: Original strand, 33858538 - 33858704
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||||||||       ||||||||||||| |||||  |||     
T  33858538 atagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattt-ataaa 33858636  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacaca 340  Q
    ||||||||||||||||||||||| |||||||  |||||||||||  ||||||||||||||||||||||    
T  33858637 gtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 11607534 - 11607705
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||||||       ||||||||||||| |||||  |||     
T  11607534 atagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacattt-ataaa 11607632  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||| |||||||||||||||||| |||||||  |||| |||||| ||||||||||||||||||| ||||||||    
T  11607633 gtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtgg 11607705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 19357262 - 19357432
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||| ||| |||||       |||||||||||||||||||  |||     
T  19357262 atagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcattta-taaa 19357359  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||| |||||||||||||||||| |||||||| |||| |||||| |||||||||| |||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtgg 19357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 329
Target Start/End: Complemental strand, 33271785 - 33271630
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    ||||||||| |||| ||||||| ||||||| |||| |||||||||||||| ||| |||| || |||||       |||||||||||||||||||   ||     
T  33271785 atagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatcaa- 33271687  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtacctt 329  Q
    ||||||||| ||| || |||||| |||||||| ||||||||||||||||||||||||    
T  33271686 gtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 345
Target Start/End: Complemental strand, 1826426 - 1826259
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    |||||||||| |||||||||||||| |||||| |||||| |||||| ||  |||||||  ||||       ||||||||||||||||| |   || ||||    
T  1826426 cacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctacaaa-gtaa 1826328  T
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
     ||||||||||| |||||| |||||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  1826327 tattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||||| | |||||| |||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 39570079 - 39570214
Alignment:
Q  209 ccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaat 308  Q
    ||||||||||| |||||  |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||| |||||| |||||||| |||    
T  39570079 ccaattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacattta-taaagtaacattggtaggtgacacactctaattggccaat 39570177  T
Q  309 gatatatatcattggtaccttaatggtacacaagtgg 345  Q
    | |||||| ||||| ||| |||||| |||||||||||    
T  39570178 ggtatataccattgatactttaatgatacacaagtgg 39570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||  ||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatattta-taaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacattta-taaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 13086824 - 13086753
Alignment:
Q  274 taacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  13086824 taacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 9827884 - 9827788
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||  ||||  ||| |||| |||||||||||| ||||| |||||| | || | |||||| ||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatattta-taaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtgg 9827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||  ||||  ||| |||||| ||||| |||||||||| | |||||  |||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatattta-taaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 42148294 - 42148201
Alignment:
Q  196 tatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggc 290  Q
    ||||||||||||| |||||||||||||  || ||| |||||||||       ||||||||||||| |||||  ||| ||||||||||||||||||    
T  42148294 tatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacattt-ataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 25482742 - 25482786
Alignment:
Q  196 tatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||| ||||| |||||||| ||||| |||||||||||||||||    
T  25482742 tatataacattgcccaattaggatgtgccacatggcacacccttt 25482786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 34392081 - 34392252
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||| ||  |||||||||||||       |||||||||||||||||||  |||     
T  34392081 atagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcattta-taaa 34392179  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||| |||||||||||||||||| |||||||| |||| |||||| ||||||||||| ||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtgg 34392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 173 - 331
Target Start/End: Original strand, 23863803 - 23863958
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||  |||||||||||||       |||||||||||||||||||  |||     
T  23863803 atagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcattt-ataaa 23863901  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaa 331  Q
    ||||||||||||||||||||||| |||||| | |||   ||||| ||||||||||||||    
T  23863902 gtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 342
Target Start/End: Complemental strand, 7381846 - 7381695
Alignment:
Q  189 ataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtg 288  Q
    |||||| ||||||| |||| ||||||| ||||||||||||| |||| |||||       |||||||||||||| ||||  ||| ||||||||||||| ||    
T  7381846 ataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaattta-taaagtaacattggtagatg 7381749  T
Q  289 gcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaag 342  Q
    ||||||| |||||||| |||  |||||| |||||||||||||||||||||||||    
T  7381748 gcacactctaattggccaatagtatataccattggtaccttaatggtacacaag 7381695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 37357917 - 37358092
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt----nnnnnnntatatcaaataaagcatttgg 268  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||||   |||            |||| |||||||||||||      
T  37357917 atagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt-a 37358015  T
Q  269 taatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||| ||||||||| |||||| |||||| ||||| |  |||| ||||||||||||||||||||||| |||||||||||    
T  37358016 taaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtgg 37358092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 4779752 - 4779635
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| || |||| |||||       |||||||||||||| ||||  ||| ||||    
T  4779752 cacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtattt-ataaagtaa 4779654  T
Q  277 cattggtaggtggcacact 295  Q
    ||||| |||| ||||||||    
T  4779653 cattgttaggcggcacact 4779635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 21604055 - 21603959
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| ||||||||||||||||  ||||| |||||||  |||| |||||| ||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacattta-taaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 21603959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 345
Target Start/End: Complemental strand, 4775799 - 4775634
Alignment:
Q  180 ttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacat 279  Q
    ||||||| ||||||| |||||||||||||||||||| | |||| ||  ||||||| |||||       ||||| ||||||| || ||  ||| |||| ||    
T  4775799 ttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaataaagtaagat 4775700  T
Q  280 tggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||| ||  ||| | |||||||| ||| |||||||||||||||| |||||||||||| ||||||    
T  4775699 tggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtgg 4775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 21606210 - 21606149
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca 234  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  21606210 atagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 25275622 - 25275741
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    ||||||||| |||| ||||||| |||||| ||||||||||||||||||| |||| ||||||| |||||       |||||||||||||| ||||   ||     
T  25275622 atagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtattt--aaaa 25275719  T
Q  273 gtaacattggtaggtggcacac 294  Q
    ||||||||| ||||||||||||    
T  25275720 gtaacattgataggtggcacac 25275741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 34904304 - 34904351
Alignment:
Q  297 taattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    ||||| |||||||||||||| |||||||||||||||| |||| |||||    
T  34904304 taattagcaaatgatatataacattggtaccttaatgatacaaaagtg 34904351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 37742896 - 37742738
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||||| ||| |||||||| ||||       |||||||||||||||||| ||||||    
T  37742896 atagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcatt-ggtaat 37742798  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaat 332  Q
    ||||||||||||||||||| ||| |||||| | ||||||||||| |||||||||||||||    
T  37742797 gtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaat 37742738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 177 - 345
Target Start/End: Complemental strand, 44380421 - 44380254
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||  ||| ||||    
T  44380421 cacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcattt-ataaagtaa 44380323  T
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
     |||| |||||| |||||| |||||||  |||  |||||| ||||||||||||||||||||||||||||    
T  44380322 tattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtgg 44380254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 170 - 341
Target Start/End: Complemental strand, 33509854 - 33509684
Alignment:
Q  170 caaatagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggt 269  Q
    |||||||||||||||||  |||||| |||||| ||||||| |||||||||||| ||  ||||||| |||||       || |||||||||||||| |  |    
T  33509854 caaatagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatcta-t 33509756  T
Q  270 aatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaa 341  Q
    || |||| |||||||||||||||||| |||||||  |||||||||||  ||| |||||||||||||||||||    
T  33509755 aaagtaatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 198 - 345
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  198 tataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgt 297  Q
    |||||||||| |||||||||||||  ||  |||||||||||||       ||||||||||||||||| |  ||| ||||||||| |||||| |||||| |    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatcta-taaagtaacattgataggtgacacactct 47426398  T
Q  298 aattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||| |||| ||||||  |||||||||||||||||||||||||||    
T  47426397 aattggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 344
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||||||||| ||||||  ||| |||||||||||| |||||||||| |||||||| |||| |||||| |||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcattta-taaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||||| | |||||| |||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtattta-taaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 32319468 - 32319534
Alignment:
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagt 343  Q
    |||| |||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||    
T  32319468 catttgtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagt 32319534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacattta-taaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 10179868 - 10179934
Alignment:
Q  279 ttggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||| |||||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 10179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  |||  ||||||||||| |||||||||| | |||||  |||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacattta-taaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 337
Target Start/End: Complemental strand, 35094717 - 35094554
Alignment:
Q  175 agcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgt 274  Q
    |||| ||||||| ||||||| ||| || |||||||||||||||||||||||| || |||| |||||       |||||||||||||  ||||  ||| ||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatattt-ataaagt 35094619  T
Q  275 aacattggtaggtggc--acactgtaattggcaaatgatatatatcattggtaccttaatggtac 337  Q
    ||||||||||||||||  || || ||||| |  |||| |||||| || |||||| ||||||||||    
T  35094618 aacattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtac 35094554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 10018671 - 10018737
Alignment:
Q  279 ttggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||| | |||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtgg 10018737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| |||||||| ||| |||||||||| | ||||   |||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacattta-taaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 39498769 - 39498838
Alignment:
Q  274 taacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagt 343  Q
    |||||| | |||||| |||||| |||||| | ||| ||||||||||||||||| ||||||||||||||||    
T  39498769 taacatcgataggtgacacactttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 10123211 - 10123277
Alignment:
Q  279 ttggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||| | |||| | | ||||||||| ||||| ||| ||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtgg 10123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 19619269 - 19619217
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtca 225  Q
    ||||||| |||||| ||||||| |||||||||||| ||||||| |||||||||    
T  19619269 atagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 322
Target Start/End: Complemental strand, 17466437 - 17466296
Alignment:
Q  180 ttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacat 279  Q
    ||||||| | ||||| ||||||||||||  || ||||| ||||  || ||||| |||||||       |||||||| |||| |||||  ||| |||||||    
T  17466437 ttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcattta-taaagtaacat 17466339  T
Q  280 tggtaggtggcacactgtaattggcaaatgatatatatcattg 322  Q
    || |||||| |||||| |||||| | ||||||||||| |||||    
T  17466338 tgataggtgacacactctaattgaccaatgatatataccattg 17466296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 12473875 - 12473704
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||||||||  || ||||||||||       ||||||||||||||||| |  |||     
T  12473875 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatcta-taaa 12473777  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||| ||||||||    
T  12473776 gtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 12528284 - 12528113
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||||||||||  || ||||||||||       ||||||||||||||||| |  |||     
T  12528284 atagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatcta-taaa 12528186  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||| ||||||||    
T  12528185 gtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 345
Target Start/End: Original strand, 35869575 - 35869742
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    ||||||| || ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||       ||||||||||||| |||||  ||  ||||    
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacattta-tatagtaa 35869673  T
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||| | |||||||  |||| |||||| ||||||||||||||||||||||||||||    
T  35869674 cattggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtgg 35869742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 345
Target Start/End: Complemental strand, 51812081 - 51811914
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    ||||||| || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||       ||||||||| |||  ||||  ||| ||||    
T  51812081 cacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaattt-ataaagtaa 51811983  T
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||| ||| |||||||| ||| ||||||||| ||| |||||||||||||||| |||||    
T  51811982 cattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtgg 51811914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 188 - 345
Target Start/End: Complemental strand, 21260950 - 21260794
Alignment:
Q  188 cataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggt 287  Q
    ||||||| |||||| ||||  |||||||||||||| ||  |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacattta-taaagtaacattggtaggt 21260852  T
Q  288 ggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    | |||||| |||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  21260851 gacacactctaattggccaatgatatatatcattggtaccttaatggtatataagtgg 21260794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 181 - 345
Target Start/End: Complemental strand, 22343500 - 22343337
Alignment:
Q  181 tgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacatt 280  Q
    |||||| ||||||| |||||| |||||| ||||||||||||||||  ||||||| |||||       |||||||||||||||||||  ||| ||||||||    
T  22343500 tgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcattta-taaagtaacatt 22343402  T
Q  281 ggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    | ||| || |||||| |||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  22343401 gatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtgg 22343337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 193 - 344
Target Start/End: Original strand, 33249394 - 33249544
Alignment:
Q  193 tgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcac 292  Q
    ||||||||| |||||  |||||||| |||| ||  |||||||||||||       |||||||||||||||||||  ||| |||||||||||||||| |||    
T  33249394 tgatatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcattta-taaagtaacattggtaggtgacac 33249492  T
Q  293 actgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    ||| |||||||| |||  |||||| |||| ||||||||||||||||||||||    
T  33249493 actctaattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 55590642 - 55590482
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||| ||| ||||||| ||||| |||||| |||||||||||||||||| ||||||| |||||       ||||||||||||||               
T  55590642 atagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag----------- 55590554  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
     ||||||||||||||| |||||| ||||||   ||||||||||| ||||||||||||||||||||||||||||    
T  55590553 -taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtgg 55590482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 52910126 - 52910219
Alignment:
Q  250 tatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||||||||||||||  ||| |||| |||||||||||||||||| |||||||| |||| |||||| |||||||||| | ||||||||||||||    
T  52910126 tatcaaataaagcattta-taaagtaatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacattta-taaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 34829182 - 34829253
Alignment:
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||||||||||||| |||||| |||||||| | ||||||||||||||||||||||||| ||||| |||||    
T  34829182 gtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtg 34829253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  286 gtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaa 341  Q
    |||||||||  |||||||| |||||||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||| ||||||| |||||  ||| |||||||||||| |||||||| | |  ||||  |||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacattta-taaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||||||||||||||||  |||  ||||||||||| ||| |||||| |||||| | ||||| | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcattta-taaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 1796717 - 1796654
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacacccttt 240  Q
    |||||||||| ||||||| |||||||||||||||||||| | |||| ||| || |||| |||||    
T  1796717 cacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 35781076 - 35781021
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggca 232  Q
    |||||| ||| ||||||| |||||||||||| |||||||||||||| ||| |||||    
T  35781076 cacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 345
Target Start/End: Original strand, 41179567 - 41179734
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||| ||  ||||||| || ||       ||||| ||||||| |||||  ||| ||||    
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacattta-taaagtaa 41179665  T
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||| |||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41179666 catcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtgg 41179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 24337830 - 24338001
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||  |  |||||||||||||       ||||||||||||||||| |  |||     
T  24337830 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatct-ataaa 24337928  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| ||||||||| |||||| |  ||| |||||| ||||| ||||||||| ||||||||||||    
T  24337929 gtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 11254028 - 11254198
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||| ||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||       ||||||||||||| |||||  |||     
T  11254028 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacattt-ataaa 11254126  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||| | ||| ||| |||  ||||||||||||||||||||  ||||||||||||||||||    
T  11254127 gtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtgg 11254198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 4708333 - 4708470
Alignment:
Q  199 ataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgta 298  Q
    ||||||||| | |||||||||||| ||| |||||||||||||       ||||||||||||| |||||  ||| |||||||||||||||| |||||| ||    
T  4708333 ataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacattta-taaagtaacattggtaggtgacacacttta 4708431  T
Q  299 attggcaaatgatatatatcattggtaccttaatggtac 337  Q
    ||||||  |||||||||  ||||||||||||| ||||||    
T  4708432 attggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 18168481 - 18168392
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtaca 338  Q
    |||||||||||||| ||||  ||| |||| |||||||||||| ||||| ||||||   ||||||||||| |||||||||||||||||||||    
T  18168481 tatatcaaataaagtattta-taaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 18632038 - 18631949
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtaca 338  Q
    |||||||||||||| ||||  ||| |||| |||||||||||| ||||| ||||||   ||||||||||| |||||||||||||||||||||    
T  18632038 tatatcaaataaagtattta-taaagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||| |||||  ||| |||||||||||| |||| ||||| | ||||   |||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacattta-taaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 177 - 344
Target Start/End: Original strand, 1211848 - 1212014
Alignment:
Q  177 cacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaatgtaa 276  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||| ||| |||||||||||||       |||||||||||||||| | | ||| ||||    
T  1211848 cacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagca-tcgataaagtaa 1211946  T
Q  277 cattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||  |||||||||||  ||||| || |||| |||||| |||||||||||||||||||||||||||    
T  1211947 cattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 5403876 - 5404047
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||  || ||||||       ||||||||||||| ||| |  |||     
T  5403876 atagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatct-ataaa 5403974  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||||| ||| ||| || | ||| ||||||| |||| |||||||||||||||||||||||    
T  5403975 gtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 345
Target Start/End: Original strand, 32644838 - 32645007
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||| ||| |||  |||||||||||||       |||| ||||||||| ||||  |||     
T  32644838 atagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtattt--taaa 32644934  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||| ||||||| |||||  |||||||| |||||||||||  || | || |||||||||||||| ||||    
T  32644935 gtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtgg 32645007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 11753232 - 11753167
Alignment:
Q  280 tggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||| ||||| ||||||||  ||| |||||| ||||||||||||||||||||||||||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtgg 11753167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 345
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||||||||||||| ||||  ||| |||||||||||| |||||||||| | |||||  |||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtattta-taaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 10503259 - 10503303
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattaga 217  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  10503259 atagcacttgtgtaccataatggtatataccattgtccaattaga 10503303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 344
Target Start/End: Complemental strand, 11113628 - 11113557
Alignment:
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||||| ||| ||| |||||| | ||| |  |||| |||||| |||||||||||||||||||||||||||    
T  11113628 gtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 11365 - 11195
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||| ||||||| ||||||| ||||||||||||  || |||||||||||||| |||||||||||||       ||||||||||||| |||||  |||     
T  11365 atagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacattt-ataaa 11267  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    ||||||||||||||||| | ||| ||| |||  ||||||||||||||||||||  ||||||||||||||||||    
T  11266 gtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtgg 11195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 344
Target Start/End: Original strand, 13005 - 13176
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcaca-ccctttnnnnnnntatatcaaataaagcatttggtaa 271  Q
    |||||||||||||| ||||||| |||||||||||| || ||||||||||| ||| ||||||| ||||||       |||||||||||||||||  | |||    
T  13005 atagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatc-gataa 13103  T
Q  272 tgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
     |||||||||  |||||||||||  ||||| || |||| |||||| |||||||||||||||||||||||||||    
T  13104 agtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 34363 - 34194
Alignment:
Q  173 atagcacttgtgtaacataatgatatataccattgtccaattagaatgtgtcacatggcacaccctttnnnnnnntatatcaaataaagcatttggtaat 272  Q
    |||||| ||||||| ||||| | |||||| |||| ||||||||||||||||||| || ||||||||||       |||||||||||||  ||||  |||     
T  34363 atagcatttgtgtaccataagg-tatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatattta-taaa 34267  T
Q  273 gtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtgg 345  Q
    |||| ||||||| |||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  34266 gtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtgg 34194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  248 tatatcaaataaagcatttggtaatgtaacattggtaggtggcacactgtaattggcaaatgatatatatcattggtaccttaatggtacacaagtg 344  Q
    |||||||||||||  ||||  ||| |||| |||||||||||||||||| |||||||| ||||||||||       ||||||||||||||||||||||    
T  23174 tatatcaaataaaatattta-taaagtaaaattggtaggtggcacactctaattggccaatgatatatc------gtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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