View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19437_low_6 (Length: 385)
Name: NF19437_low_6
Description: NF19437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19437_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 46730805 - 46731189
Alignment:
| Q |
1 |
ctggtattgggattcggaatacacattataaatctcacctactctgtaaaaacagaaacaatgatgttggacacacggcaatagcccttcagataacaat |
100 |
Q |
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| T |
46730805 |
ctggtattgggattcggaatacacattataaatctcacctactctgtaaaaacagaaacaatgatgttggacacacggcaatagcccttcagataacaat |
46730904 |
T |
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| Q |
101 |
tttcactccatgtagaaattgcgattggatacaaaaattacaggagttagcaccgttgtctacaatacaaaatttaataacaattctatacgaatcctat |
200 |
Q |
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| T |
46730905 |
tttcactcgatgtagaaattgtgattgggtacaaaaattacaggagttagcactgttgtctacaatacaaaatttaataacaattctatacgaatcctat |
46731004 |
T |
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| Q |
201 |
acggggattaataactttttctgagttcatagagtaggattgattacgtactgaagtgccagcaggtttatccaaaactacatatgattcctccacggct |
300 |
Q |
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| T |
46731005 |
acggggattaataactttttctgagttcatagagtaggattgattacgtactgaagtgccagcaggtttatccaaaactacatatgattcctccacggct |
46731104 |
T |
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| Q |
301 |
atgatccttgatctccaatcaatctcatagcacctaaaaatatattaagaatgtcaaacattatcatatcatgacactacaatta |
385 |
Q |
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| T |
46731105 |
atgatccttgatctccaatcaatctcatagcacctaaaaatatattaagaatgtcaaacattatcatatcatgacactacaatta |
46731189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 138 - 373
Target Start/End: Original strand, 7927389 - 7927623
Alignment:
| Q |
138 |
ttacaggagttagcaccgttgtctacaatacaaaatttaataacaattctatacgaatcctatacggggattaataactttttctgagttcatagagtag |
237 |
Q |
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| T |
7927389 |
ttacaggacttatcactgttgactacaatctaaaatttcataacaattctataagtatcctataagggggttaatagctttt-ctgagttcataatgtag |
7927487 |
T |
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| Q |
238 |
gattgattacgtactgaagtgccagcaggtttatccaaaactacatatgattcctccacggctatgatccttgatctccaatcaatctcatagcacctaa |
337 |
Q |
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| T |
7927488 |
gatagattacatactgaagtaccagcaggtttatccaaaacgacgtatgattccttcacagctatgatccttgatctccagtcaatctcataggacctaa |
7927587 |
T |
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| Q |
338 |
aaatatattaagaatgtcaaacattatcatatcatg |
373 |
Q |
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| T |
7927588 |
aaagaactttcaaatgtcaaacattatcatatcatg |
7927623 |
T |
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