View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_1 (Length: 743)

Name: NF19438_high_1
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_high_1
NF19438_high_1
[»] chr7 (1 HSPs)
chr7 (1-728)||(31707427-31708154)


Alignment Details
Target: chr7 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Complemental strand, 31708154 - 31707427
Alignment:
Q  1 tcatcaaaaatttgaagagcttctccgggttggccattttgagcacatgccattatcattgttgtccatgagacaactgaacgagaattcatggatcgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31708154 tcatcaaaaatttgaagagcttctccgggttggccattttgagcacatgccattatcattgttgtccatgagacaactgaacgagaattcgtggatcgaa 31708055  T
Q  101 aaacagtccatgcactatccatgcatccacattttgcatacatgtcaagaagagcattatcaacacaaacatcaacgtcacttccaagttcgatcctcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31708054 aaacagtccatgcactatccatgcatccacattttgcatacatgtcaagaagagcattatcaacacaaacatcaacgtcacttccaagtttgatcctcaa 31707955  T
Q  201 cccatgaaattgtttcccttcctccattgaagctaaacaggcacaagcatttagagcagttgccaaggtaaatttatttggcttgacacccannnnnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||            
T  31707954 cccatgaaattgtttcccttcctccattgaagctaaacaggcacaagcatttagagcagttgccaaggtaaatttatttggcttgacgcccatttttttc 31707855  T
Q  301 nnnnnngcaatgactgcaagtgccatccttggctccccccactgtaaacacccatcagccatttgagtccaagagcatacatctttatgaggaatctcat 400  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31707854 atttttgcaatgactgcaagtgccatccttggctccccccactgtaaacacccatcagccatttgagtccaagagcatacatctttatgaggaatctcat 31707755  T
Q  401 caaatgctttgaaaccctcctccaacttttgattttttaaatacatgtcaactaaagaattccctacacaaatgtcatccccataaccactcctaacaag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31707754 caaatgctttgaaaccctcctccaacttttgattttttaaatacatgtcaactaaagaattccctacacaaatgtcatccccataaccactcctaacaag 31707655  T
Q  501 ttgtgcatgaacttgcattcccattttaagagaggagatcgtagccaaccccgtcaaggcactagcaaaagtgaactcatccggctttacaccctcacga 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31707654 ttgtgcatgaacttgcattcccattttaagagaggagatcgtagccaaccccgtcaaggcactagcaaaagtgaactcatccggctttacaccctcacga 31707555  T
Q  601 ttcatgtatctccaaaatactggaatctgttcagatgaaaactccaagtaaccccccatcatagtattccatgttacagtatccctaataggacttgtct 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31707554 ttcatgtatctccaaaatactggaatctgttcagatgaaaactccaagtaaccccccatcatagtattccatgttacagtatccctaataggacttgtct 31707455  T
Q  701 caaatatttgcaaagcctctgtcaattt 728  Q
    ||||||||||||||||||||||||||||    
T  31707454 caaatatttgcaaagcctctgtcaattt 31707427  T

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