View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_13 (Length: 466)
Name: NF19438_high_13
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Original strand, 40917323 - 40917737
Alignment:
| Q |
15 |
gtgttgaggttggttaaagccttgaagtggaaattgcttctagtagtaggagtgaaggtatttgattaatcctgtaattaagtaaatacaataacaggtc |
114 |
Q |
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| T |
40917323 |
gtgttgaggttggttaaagccttgaagtggagtttgcttctagtagtaggagtgaaggtatttgattaatcctgtaattaattaagtacaataacaggtc |
40917422 |
T |
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| Q |
115 |
acatgtttagtcaaaaataaaaattaaatatttgcaaattattagcgacattcgtagattattgtgggttaatgtgtttgtgaataattagtatgttcac |
214 |
Q |
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| T |
40917423 |
acatgtttagtcaaaaataaaaattaaatatttgcaaattattagcgacattcgtagattat-------------------gaataattagtatgttcac |
40917503 |
T |
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| Q |
215 |
actgggaaacaataatgaacacgtttcattagttatattccaagtcatctaccataaaaaattacaagtagtatgctttgtttaatttacattacaggag |
314 |
Q |
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| T |
40917504 |
actgggaaacaataatgaacacgtttcattagttatattccaagtcatctaccataaaaaattccaagtagtatgctttgtttaatttacattacaggag |
40917603 |
T |
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| Q |
315 |
aaaacaaaacattagcatgtgatattctaggtgttcctggggctcatgtaatttgaagctccaattccaaattgattagaaacaagaagtgcaaacagac |
414 |
Q |
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| T |
40917604 |
aaaacaaaacattagcatgtgatattctaggtgttcctggggctcatgtaatttgaagctccaattccaaattgattagaaacaagaagtgcaaacagac |
40917703 |
T |
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| Q |
415 |
acggatattccaagaagacatatgttacaatgaaac |
450 |
Q |
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| T |
40917704 |
acggatattccaagaagac--atgttacaatgaaac |
40917737 |
T |
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