View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_14 (Length: 429)
Name: NF19438_high_14
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Complemental strand, 20007546 - 20007147
Alignment:
| Q |
16 |
gtttggtcaacaaatttgaacaatgtttcaacaacaagcaattctagtgtcacactttcagattatggaaaccttatcttgtttgaaacaacaacagaaa |
115 |
Q |
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| T |
20007546 |
gtttggtcaacaaatttgaacaatgtttcaacaa---gcaattctagtgtcacactttcagattatggaaaccttatcttgtttgaaacaacaacagaaa |
20007450 |
T |
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| Q |
116 |
aaaccatatggcagagttccgatcatcctacagattcattattaccaagcctgacatttacaagcaacatgacactcacatcatggaaaacatctaatga |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20007449 |
aaaccatatggcagagttccgatcatcctacaaattcaatattaccaagcctgacatttacaagcaacatgacactcacatcgtggaaaacatctaatga |
20007350 |
T |
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| Q |
216 |
tccgtccaacggaagcttcactttaggcatcgaacggttgaatatgccagaagtttttattaggaaagaaaatcggccatattggcgtagtggtccttgg |
315 |
Q |
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| T |
20007349 |
tccgtccaacggaagcttcactttaggcatcgaacggttgaatatgccagaagtttttattaggaaagaaaatcggccatattggcggagtggtccttgg |
20007250 |
T |
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| Q |
316 |
aacaatcagatctttatagggatagaagacatgtcagctctttatcttaatggttttcatttccagaaagatagaacgggaggaactcttgatttagtct |
415 |
Q |
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| T |
20007249 |
aacaatcaaatatttatagggatagaagacatgtcagctctttatcttaatggttttcatttccagaaagatagaacgggaggaactcttgatttagtct |
20007150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 20229805 - 20229857
Alignment:
| Q |
265 |
gaagtttttattaggaaagaaaatcggccatattggcgtagtggtccttggaa |
317 |
Q |
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||||| |||||| |||| |||| |||||||| |||||| |||||||||||||| |
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| T |
20229805 |
gaagtgtttatttggaatgaaactcggccatgttggcgcagtggtccttggaa |
20229857 |
T |
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