View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_16 (Length: 428)
Name: NF19438_high_16
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 168 - 354
Target Start/End: Original strand, 54951156 - 54951344
Alignment:
| Q |
168 |
gttataagccaacaagaaaagtttgtttaccaaacacttttcatttgatcaaataagcttatataagttagttcaataaattattaatctatctaaccac |
267 |
Q |
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| T |
54951156 |
gttataagctaataagaaaagtttatttagcaaacacttttcatttgatcaaacaagcttatataagttagttcaataaattattaatctatctaaccac |
54951255 |
T |
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| Q |
268 |
aagaatcatcgatt-aactgttgggattttgtattatgatatttt-tctcacttttatatgcccttcgtccgtttcttattcatctcat |
354 |
Q |
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| T |
54951256 |
aagaatcatcgattcaactgttgggattttgtattatgatattttatctcacttttatatgcccttcgtccgtttcttattcatctcat |
54951344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 54950497 - 54950590
Alignment:
| Q |
8 |
tgagagaagagaagaattgatcatggaattctgcccaaaactgacgatatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat |
101 |
Q |
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| T |
54950497 |
tgagagaagagaagaattgatcatggaattctgcccaaaactgacgacatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat |
54950590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 54944793 - 54944869
Alignment:
| Q |
25 |
tgatcatggaattctgcccaaaactgacgatatgcatctttagaaaagaatggatgtatcactatcaatcaaagaat |
101 |
Q |
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| T |
54944793 |
tgattatggaattctgcccaaaaacgatgacatgcatctttacaaaagagtggcttcatcactatcaatcaaagaat |
54944869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 46334737 - 46334697
Alignment:
| Q |
190 |
ttgtttaccaaacacttttcatttgatcaaataagcttata |
230 |
Q |
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| T |
46334737 |
ttgtttaccaaacacgtctcatttgatcaaacaagcttata |
46334697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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