View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_19 (Length: 418)
Name: NF19438_high_19
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 44851484 - 44851868
Alignment:
| Q |
1 |
agaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851484 |
agaccaagaagatcctttcaaactaaatatagaaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaaag |
44851583 |
T |
|
| Q |
101 |
aatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcatttttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851584 |
aatatgtcagcatctaaatcagaagaatttgattttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcatttttt |
44851683 |
T |
|
| Q |
201 |
ctgatgaaaggattcctgttgccccttcttgattgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851684 |
ctgatgaaaggattcctgttgccccttcttgattgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcatat |
44851773 |
T |
|
| Q |
301 |
atcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccttact |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44851774 |
atcgcatgctacaaacatcccacatatcaatttcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccatact |
44851868 |
T |
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