View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_25 (Length: 372)
Name: NF19438_high_25
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 146 - 355
Target Start/End: Original strand, 4408792 - 4409001
Alignment:
| Q |
146 |
gatgacatagttagatgattgaatgtacccaacaaatctccatggtatcgaaatgttaaaaataaattttgtaaaatttaacctaatgacttttattaca |
245 |
Q |
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| T |
4408792 |
gatgacatagttagatgattgaatgtacccaactaagctccatggtatcgaaatgttaaaaataaattttgtaaaatttaacctaatgacttttattaca |
4408891 |
T |
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| Q |
246 |
tatgatcatatccaattaatccaaatggattctttgataaaactctcccgtgattttttaaaacttacaaataattcaaattataaaatgctatccatca |
345 |
Q |
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| T |
4408892 |
tatgatcatatccaattaatccaaatggattctttgataaaactctcccgtgattttttaaaacttacaaataattcaaattataaaatgctttccatca |
4408991 |
T |
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| Q |
346 |
ttattcctta |
355 |
Q |
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||||| |||| |
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| T |
4408992 |
ttattgctta |
4409001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 4408656 - 4408733
Alignment:
| Q |
10 |
ataatactcctcgttttaaagaatggaaaaaataaggaaagttcttggtcaaattggatttgttagataccggtgtcc |
87 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4408656 |
ataacactcctcgttttaaagaatggaaaaaataaggaaagttcttggtcaaattggatttgttagataccggtgtcc |
4408733 |
T |
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