View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_29 (Length: 344)
Name: NF19438_high_29
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 44073699 - 44074018
Alignment:
| Q |
3 |
agaaataacttgagcgaggtcaatttgtgtgggagtgagtgagtgggacttgaatgagaattagaaaaggtcttgttgggacttgggaccacttcataat |
102 |
Q |
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| T |
44073699 |
agaaataacttgagtgaggtcaatttgtgtgggagtgagtg----ggacttgaatgagaattagaaaaggtcttgttgggacttgggaccacttcataat |
44073794 |
T |
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| Q |
103 |
cagattcttcttctttagtaacgcaaaaatgttaaaaagtttaagacnnnnnnnccaatctaactatggatattgtgcacgctgtacatagcctgcaaga |
202 |
Q |
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| T |
44073795 |
cagattcttcttctttagtaacgcaaaaatgttaaaaagtttaagacaaaaaaaccaatctaactatggatattgtgcacgctgtacatagcctgcaaga |
44073894 |
T |
|
| Q |
203 |
acacattgatacgtgtcctatctaagagtgtcgtgccgaccatgcatcactttacttcttttctaaagtttccaagtataatttgataatcttataggat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44073895 |
acacattgatacgtgtcctatctaagagtgtcgtgccgaccatgcatcactttacttcttttctaaagtttccaagtataatttgataatcttataggat |
44073994 |
T |
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| Q |
303 |
ttaattcatatacactactataaa |
326 |
Q |
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|||||||||||||||||||||||| |
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| T |
44073995 |
ttaattcatatacactactataaa |
44074018 |
T |
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