View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_34 (Length: 298)

Name: NF19438_high_34
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_high_34
NF19438_high_34
[»] chr7 (1 HSPs)
chr7 (11-298)||(44851217-44851504)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 44851217 - 44851504
Alignment:
Q  11 catcatcacctatacttcaacacataaccatccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatccaaaaccgaaaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851217 catcatcacctatacttcaacacataaccatccagatcccactgccctctcctccaccacaaatttagctcaacaaccaaaagaatccaaaaccgaaaca 44851316  T
Q  111 accaaagatctcccagttacttctaaggaagaaaaccaagaacagaaacaggtagaagaggagattaacagtaataagagcactgtgagtagtagtgatc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851317 accaaagatctcccagttacttctaaggaagaaaaccaagaacaaaaacaggtagaagaggagattaacagtaataagagcactgtgagtagtagtgatc 44851416  T
Q  211 aagttacaaatgaagaaaattttcattacttacaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44851417 aagttacaaatgaagaaaattttcattacttacaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaa 44851504  T

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