View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_36 (Length: 297)

Name: NF19438_high_36
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_high_36
NF19438_high_36
[»] scaffold0451 (1 HSPs)
scaffold0451 (39-261)||(7579-7801)
[»] scaffold0638 (1 HSPs)
scaffold0638 (56-129)||(5589-5662)
[»] chr2 (7 HSPs)
chr2 (82-229)||(27412663-27412815)
chr2 (154-200)||(26009786-26009832)
chr2 (154-187)||(10429913-10429946)
chr2 (155-188)||(16452244-16452277)
chr2 (154-187)||(26849276-26849309)
chr2 (154-187)||(36959383-36959416)
chr2 (160-200)||(14195207-14195247)
[»] chr7 (3 HSPs)
chr7 (154-200)||(46976960-46977007)
chr7 (154-187)||(33084985-33085018)
chr7 (154-187)||(41437126-41437159)
[»] chr4 (4 HSPs)
chr4 (154-200)||(29728815-29728861)
chr4 (158-200)||(25391017-25391059)
chr4 (154-188)||(38450695-38450729)
chr4 (156-200)||(2097082-2097126)
[»] chr5 (1 HSPs)
chr5 (151-200)||(10635364-10635413)


Alignment Details
Target: scaffold0451 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 39 - 261
Target Start/End: Complemental strand, 7801 - 7579
Alignment:
Q  39 ggtcgtgcttacctttgcataacatagtagctgctagtaccaattaatgcataatttcatctctaagtttcccatgtctatttatttcttcatatgattt 138  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7801 ggtcatgcttacctttgcataacatagtagctgctagtgacaattaatgcataatttcatctctaagtttcccatgtctatttatttcttcatatgattt 7702  T
Q  139 tgacaaaacttgtgtggggttgggtagctcaactggtttgacctaagggtaaaagagttggaaatccggttcatgtcctgacaatgagaacaactaacat 238  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7701 ttacaaaacttgtgtggggttgggtagctcaactggtttgacctaagggtaaaagagttggatatccggttcatgtcctgacaatgagaacaactaacat 7602  T
Q  239 accaattaacattttatatgttt 261  Q
    |||||||||||||||||| ||||    
T  7601 accaattaacattttataagttt 7579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 5589 - 5662
Alignment:
Q  56 cataacatagtagctgctagtaccaattaatgcataatttcatctctaagtttcccatgtctatttatttcttc 129  Q
    ||||||||||||||| |||||  |||||||||||| |||||||||| || |||||||| ||||||| |||||||    
T  5589 cataacatagtagcttctagttgcaattaatgcatcatttcatctcaaaatttcccatctctatttctttcttc 5662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 27412663 - 27412815
Alignment:
Q  82 ttaatgcataatttcatctctaagtttcccatgtctatttatttcttcatatgattttgacaaaacttgtgtggggttgggtagctcaactggtttgacc 181  Q
    ||||||||| ||||||||||  | |||| |||||||||||||||  |||||| ||||| ||||||    |||  ||||||||||| ||||||||||||||    
T  27412663 ttaatgcatcatttcatctccgaatttcacatgtctatttatttaatcatataatttttacaaaaaca-tgtaaggttgggtagcacaactggtttgacc 27412761  T
Q  182 taaggg----taaaagagttggaaatccg--gttcatgtcctgacaatgagaac 229  Q
    ||||||    | ||||||||||| |||||  ||||||||||| | |||||||||    
T  27412762 taagggttaattaaagagttggatatccggagttcatgtcctaataatgagaac 27412815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 26009786 - 26009832
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaagggtaaaagagttgga 200  Q
    |||||||||||||||||||||||||| | |||||  |||||||||||    
T  26009786 ggggttgggtagctcaactggtttgagccaagggataaagagttgga 26009832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 10429946 - 10429913
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaaggg 187  Q
    |||||||||||||||||||||||||| |||||||    
T  10429946 ggggttgggtagctcaactggtttgagctaaggg 10429913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 16452277 - 16452244
Alignment:
Q  155 gggttgggtagctcaactggtttgacctaagggt 188  Q
    ||||||||||||||||||||||||| ||||||||    
T  16452277 gggttgggtagctcaactggtttgagctaagggt 16452244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 26849309 - 26849276
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaaggg 187  Q
    |||||||||||||||||||||||||| |||||||    
T  26849309 ggggttgggtagctcaactggtttgagctaaggg 26849276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 36959383 - 36959416
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaaggg 187  Q
    |||||||||||||||||||||||||| |||||||    
T  36959383 ggggttgggtagctcaactggtttgagctaaggg 36959416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 14195247 - 14195207
Alignment:
Q  160 gggtagctcaactggtttgacctaagggtaaaagagttgga 200  Q
    |||||||||||||||||||| |||||||| || ||||||||    
T  14195247 gggtagctcaactggtttgagctaagggttaaggagttgga 14195207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 46977007 - 46976960
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaaggg-taaaagagttgga 200  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  46977007 ggggttgggtagctcaactggtttgagctaagggttaaaagagttgga 46976960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 33085018 - 33084985
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaaggg 187  Q
    |||||||||||||||||||||||||| |||||||    
T  33085018 ggggttgggtagctcaactggtttgagctaaggg 33084985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 41437126 - 41437159
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaaggg 187  Q
    |||||||||||||||||||||||||| |||||||    
T  41437126 ggggttgggtagctcaactggtttgagctaaggg 41437159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 29728861 - 29728815
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaagggtaaaagagttgga 200  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||    
T  29728861 ggggttgggtagctcaactggtttgagctaagggttaaggagttgga 29728815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 25391017 - 25391059
Alignment:
Q  158 ttgggtagctcaactggtttgacctaagggtaaaagagttgga 200  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||    
T  25391017 ttgggtagctcatctggtttgagctaagggaaaaagagttgga 25391059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 38450695 - 38450729
Alignment:
Q  154 ggggttgggtagctcaactggtttgacctaagggt 188  Q
    |||||||||||||||||||||||||| ||||||||    
T  38450695 ggggttgggtagctcaactggtttgagctaagggt 38450729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 2097082 - 2097126
Alignment:
Q  156 ggttgggtagctcaactggtttgacctaagggtaaaagagttgga 200  Q
    ||||||||||||||||| |||||| |||||||| || ||||||||    
T  2097082 ggttgggtagctcaactagtttgagctaagggttaaggagttgga 2097126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 10635413 - 10635364
Alignment:
Q  151 tgtggggttgggtagctcaactggtttgacctaagggtaaaagagttgga 200  Q
    ||||| ||||||||||||||||||||||| |||||||  || ||||||||    
T  10635413 tgtggagttgggtagctcaactggtttgagctaagggataaggagttgga 10635364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University