View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_39 (Length: 289)

Name: NF19438_high_39
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_high_39
NF19438_high_39
[»] chr2 (9 HSPs)
chr2 (1-271)||(7308909-7309179)
chr2 (1-237)||(6828641-6828877)
chr2 (83-261)||(7348643-7348821)
chr2 (123-256)||(7337003-7337136)
chr2 (127-201)||(7370882-7370956)
chr2 (127-224)||(7323254-7323351)
chr2 (127-237)||(7342198-7342308)
chr2 (83-224)||(7375642-7375783)
chr2 (152-264)||(7365841-7365953)
[»] chr3 (1 HSPs)
chr3 (115-224)||(39576895-39577004)
[»] chr5 (1 HSPs)
chr5 (115-221)||(21119990-21120096)
[»] chr6 (1 HSPs)
chr6 (72-261)||(13246133-13246322)
[»] chr1 (1 HSPs)
chr1 (112-224)||(18278993-18279105)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 7308909 - 7309179
Alignment:
Q  1 ttcttgttcttgaggaatgaccgggttatttacaatatgctttgatttgaaagccattaaatgttccatgacctttgcatacagaacggtcatttcagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  7308909 ttcttgttcttgaggaatgaccgggttatttacaatatgctgtgatttgaaagccattaaatgttccatggcctttgcatatagaacggtcatttcagtg 7309008  T
Q  101 tacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7309009 tacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaa 7309108  T
Q  201 ccctggaaaggatttcaatcatcaaatcctccgggagtacggagctcggtgactccgccgttgcttcttcc 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7309109 ccctggaaaggatttcaatcatcaaatcctccgggagtacggagctcggtgactccgccgttgcttcttcc 7309179  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6828877 - 6828641
Alignment:
Q  1 ttcttgttcttgaggaatgaccgggttatttacaatatgctttgatttgaaagccattaaatgttccatgacctttgcatacagaacggtcatttcagtg 100  Q
    ||||||||||||||| | |||||||||||||| || ||||| ||||||||||||  | || ||||||  |  ||| | | | |||||||| || ||| ||    
T  6828877 ttcttgttcttgaggcacgaccgggttatttataagatgctgtgatttgaaagcattgaactgttccgcggtcttagaaaaaagaacggtgatatcattg 6828778  T
Q  101 tacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaa 200  Q
      |||| ||  |||||||||| ||| ||||||||||||| |||  ||||| |||||||| |||||||||||||||||||  |||| | ||||  ||||||    
T  6828777 agcaatttgaaaaggtgattcttcacgaattgagaatcatgaaccagcgatttccacaatttgcaaacacacctcaattgcagagtactgttcaattcaa 6828678  T
Q  201 ccctggaaaggatttcaatcatcaaatcctccgggag 237  Q
    ||||  ||||||||||||||||||  |||||||||||    
T  6828677 ccctataaaggatttcaatcatcacttcctccgggag 6828641  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 83 - 261
Target Start/End: Original strand, 7348643 - 7348821
Alignment:
Q  83 agaacggtcatttcagtgtacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaa 182  Q
    |||||||| ||||||||| || ||||   ||||||||||  || |||||||| ||||| || ||| || ||||||||||||||||||||||| |||||      
T  7348643 agaacggtgatttcagtgaacgatcttataaggtgattctccaggaattgagtatcaaaaactagtgatttccacaacttgcaaacacaccttaattcct 7348742  T
Q  183 gaggattgtttgattcaaccctggaaaggatttcaatcatcaaatcctccgggagtacggagctcggtgactccgccgt 261  Q
    |||||||| |||| ||||| || ||||||||||| |||||||| ||||||||||| |  | | ||||||||||||||||    
T  7348743 gaggattgcttgactcaactctagaaaggatttcgatcatcaactcctccgggagaattgtgttcggtgactccgccgt 7348821  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 123 - 256
Target Start/End: Original strand, 7337003 - 7337136
Alignment:
Q  123 tcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatttcaatcat 222  Q
    |||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||  |||||||||| || ||    
T  7337003 tcatgaattgcggatcaagaattaacgaattccacaacttgcaaacacacatcaattgaaaaggattgcttgattcaaccctaaaaaggatttcgataat 7337102  T
Q  223 caaatcctccgggagtacggagctcggtgactcc 256  Q
    ||  || ||||| |||| || ||| |||||||||    
T  7337103 cagttcatccggtagtatggtgcttggtgactcc 7337136  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 7370882 - 7370956
Alignment:
Q  127 gaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaac 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |||| |||| |||||    
T  7370882 gaattgagaatcaagaactagcgaattccacaacttgcaaacacacctcaattgcagagtattgcttgaatcaac 7370956  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 224
Target Start/End: Original strand, 7323254 - 7323351
Alignment:
Q  127 gaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatttcaatcatca 224  Q
    |||||||| |||||||| ||||||||||||||| |||||||| ||||||||||  |||| |||| |||| ||||| || ||||||||||| |||||||    
T  7323254 gaattgaggatcaagaactagcgaattccacaagttgcaaacgcacctcaattgcagagtattgcttgaatcaactctagaaaggatttcgatcatca 7323351  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 7342198 - 7342308
Alignment:
Q  127 gaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatttcaatcatcaaa 226  Q
    |||||||| || |||||||||||| |||||||||||| |||| ||||||| ||  |||| |  | |||| |||||||| ||||||||||||||||||||     
T  7342198 gaattgaggattaagaattagcgatttccacaacttggaaacgcacctcagttgcagagtaacgcttgactcaaccctagaaaggatttcaatcatcaat 7342297  T
Q  227 tcctccgggag 237  Q
    ||||| |||||    
T  7342298 tcctctgggag 7342308  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 7375642 - 7375783
Alignment:
Q  83 agaacggtcatttcagtgtacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaa 182  Q
    |||||||| ||||||  | ||||| ||| || ||||||| ||| || ||||  ||||| ||  ||||||||||||||||||||||| || |||||||  |    
T  7375642 agaacggtgatttcatcgaacaatttgttaatgtgattcttcaggacttgacgatcaacaaccagcgaattccacaacttgcaaacgcatctcaattgca 7375741  T
Q  183 gaggattgtttgattcaaccctggaaaggatttcaatcatca 224  Q
    || ||||| |||  |||| ||| || ||||||||||||||||    
T  7375742 gaagattgcttgcgtcaagcctcgagaggatttcaatcatca 7375783  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 7365841 - 7365953
Alignment:
Q  152 ttccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatttcaatcatcaaatcctccgggagtacggagctcggtg 251  Q
    |||||| ||||||| ||  ||||||| |  |||||||||||||| ||||| || | ||||||||| |||||||  ||| ||||||| |  | | ||||||    
T  7365841 ttccaccacttgcatactgacctcaactgcagaggattgtttgagtcaactctagcaaggatttcgatcatcagttccaccgggagaatcgtggtcggtg 7365940  T
Q  252 actccgccgttgc 264  Q
    |||||||||||||    
T  7365941 actccgccgttgc 7365953  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 39576895 - 39577004
Alignment:
Q  115 gtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatt 214  Q
    |||||||  ||||||||||| ||||| ||  ||||| ||||||||||||||||||||||| ||||  |||||||||| ||| || |||||  ||||||||    
T  39576895 gtgattctccatgaattgaggatcaacaaggagcgacttccacaacttgcaaacacaccttaattgtagaggattgtctgactccaccctcaaaaggatt 39576994  T
Q  215 tcaatcatca 224  Q
    || |||||||    
T  39576995 tcgatcatca 39577004  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 21120096 - 21119990
Alignment:
Q  115 gtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaaggatt 214  Q
    ||||||| ||||||| |||| |||| |||||| ||| |||||||| |||||||| |||||||| || ||| ||||  |||| ||||| || |||||||||    
T  21120096 gtgattcttcatgaactgaggatcacgaattaacgatttccacaagttgcaaacgcacctcaaatccagatgattacttgaatcaactcttgaaaggatt 21119997  T
Q  215 tcaatca 221  Q
    || ||||    
T  21119996 tccatca 21119990  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 261
Target Start/End: Original strand, 13246133 - 13246322
Alignment:
Q  72 cctttgcatacagaacggtcatttcagtgtacaatctgtcaaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacaca 171  Q
    |||||||||| |||||||  ||||||||  ||||||||| |  ||| ||||||||||||| || ||||| ||  ||||| ||| |  |||||||||| ||    
T  13246133 cctttgcatatagaacggagatttcagtcaacaatctgttatcgtgcttcatcatgaattcaggatcaacaaccagcgatttctatgacttgcaaacgca 13246232  T
Q  172 cctcaattcaagaggattgtttgattcaaccctggaaaggatttcaatcatcaaatcctccgggagtacggagctcggtgactccgccgt 261  Q
    ||| ||||  |||| ||||||  | ||| | || |||||||| ||||||||||  ||||  |||||||| | |  ||||||||| |||||    
T  13246233 ccttaattggagagtattgttcaaatcatctctagaaaggatgtcaatcatcagttcctttgggagtaccgtgaacggtgactctgccgt 13246322  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 18279105 - 18278993
Alignment:
Q  112 aaggtgattcatcatgaattgagaatcaagaattagcgaattccacaacttgcaaacacacctcaattcaagaggattgtttgattcaaccctggaaagg 211  Q
    |||||||||| |||||||  ||| |||||||| || | | ||||||||||||||||| || ||||| || | | ||||  |||| ||||| || |||||     
T  18279105 aaggtgattcttcatgaaaagaggatcaagaactaacaatttccacaacttgcaaacgcatctcaactccaaatgattagttgaatcaactcttgaaaga 18279006  T
Q  212 atttcaatcatca 224  Q
    ||||| |||||||    
T  18279005 atttcgatcatca 18278993  T

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