View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19438_high_48 (Length: 258)
Name: NF19438_high_48
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_48 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 33785633 - 33785407
Alignment:
| Q |
11 |
agaacctgtgatatattctggtagcatacgtgacaatattttgtttggaaaacaagatgcaagtgaaaatgaagttgttgaggctgctaggtctgcaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33785633 |
agaacctgtgatatattctggtagcatacgtgacaatattttgtttggaaaacaagatgcaagtgaaaatgaagttgttgaggctgctaggtctgcaaat |
33785534 |
T |
|
| Q |
111 |
gctcatgacttcatatcgtaagtttcctctttatgca-nnnnnnnnnattatcaagaatcgaactcggtatcctagagtttacaacactcacacactgcg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33785533 |
gctcatgacttcatatcgtaagtttcctctttatgcattttttttttattatcaagaatcgaactcggtatcctagagtttacaacactcacacactgcg |
33785434 |
T |
|
| Q |
210 |
taccgatcacttgcgtttgaacctgata |
237 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
33785433 |
ta-cgatcacttgcgtttgaacctgata |
33785407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University