View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_50 (Length: 251)
Name: NF19438_high_50
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 50964184 - 50963940
Alignment:
| Q |
7 |
tcgaagaatatcgtgaacatatgatgctagttttttgaaccctgcacctccttgtttaaaatttctttatggtcaccaatctagctacctacttggacgt |
106 |
Q |
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| T |
50964184 |
tcgaaaaaaatcgtgaacatatgatgctagttttttgaaccctgcacctccttgtttaaaatttctttatggtcaccaatctagctacctacttggacgt |
50964085 |
T |
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| Q |
107 |
tcaactttcgattaagcaaattatatcgggggtatccaagttcgatcctaactataacaacatctggctaacnnnnnnnagcttccaaccaaactatgaa |
206 |
Q |
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| T |
50964084 |
tcaactttcgattaagcaaattatatcgggggtatccaagttcgatcctaactataacaacatctggctaactttttttagcttccaaccaaactatgaa |
50963985 |
T |
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| Q |
207 |
ttttcaatgttttannnnnnngtcgagaaccgaagagttaattac |
251 |
Q |
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| T |
50963984 |
ttttcaatattttatttttttgtcgagaactgaagagttaattac |
50963940 |
T |
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