View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_56 (Length: 239)

Name: NF19438_high_56
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_high_56
NF19438_high_56
[»] chr8 (5 HSPs)
chr8 (81-224)||(11997145-11997290)
chr8 (16-85)||(14148391-14148460)
chr8 (16-83)||(5879872-5879939)
chr8 (1-80)||(9861568-9861647)
chr8 (51-83)||(28237284-28237316)
[»] chr5 (9 HSPs)
chr5 (4-81)||(38298693-38298770)
chr5 (1-78)||(22297764-22297841)
chr5 (1-83)||(25906134-25906216)
chr5 (31-81)||(33626007-33626057)
chr5 (29-80)||(2846573-2846624)
chr5 (29-79)||(2858411-2858461)
chr5 (16-81)||(29673290-29673355)
chr5 (16-81)||(38900222-38900286)
chr5 (1-81)||(3935964-3936044)
[»] chr3 (7 HSPs)
chr3 (1-82)||(30172069-30172150)
chr3 (1-79)||(30430271-30430349)
chr3 (4-82)||(43907899-43907976)
chr3 (16-81)||(32618978-32619043)
chr3 (2-81)||(4304325-4304404)
chr3 (29-77)||(30430672-30430720)
chr3 (51-83)||(37172018-37172050)
[»] chr2 (6 HSPs)
chr2 (1-82)||(18509495-18509576)
chr2 (16-79)||(980920-980982)
chr2 (2-79)||(24225551-24225628)
chr2 (1-46)||(12874857-12874902)
chr2 (61-90)||(41003315-41003344)
chr2 (12-80)||(25330560-25330628)
[»] chr1 (9 HSPs)
chr1 (1-86)||(22679503-22679588)
chr1 (16-81)||(35294332-35294397)
chr1 (1-80)||(30748951-30749030)
chr1 (1-80)||(30770402-30770481)
chr1 (1-91)||(30749117-30749207)
chr1 (1-91)||(30770568-30770658)
chr1 (1-82)||(14760050-14760131)
chr1 (1-82)||(16706333-16706414)
chr1 (1-81)||(32800301-32800381)
[»] chr6 (4 HSPs)
chr6 (3-82)||(31298903-31298982)
chr6 (29-83)||(6190566-6190620)
chr6 (1-83)||(34637601-34637683)
chr6 (16-72)||(24704315-24704371)
[»] chr4 (5 HSPs)
chr4 (17-72)||(17615605-17615660)
chr4 (1-82)||(33752710-33752791)
chr4 (1-73)||(17431137-17431209)
chr4 (5-60)||(33752322-33752377)
chr4 (15-80)||(17430713-17430778)
[»] chr7 (4 HSPs)
chr7 (1-82)||(31172352-31172433)
chr7 (29-80)||(29635235-29635286)
chr7 (51-84)||(33258531-33258564)
chr7 (1-81)||(7760607-7760687)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-45)||(11629-11673)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 11997290 - 11997145
Alignment:
Q  81 taatttatttggtcttgcaaccacgacgatatgtttatgggtgaagc--gaattctctatagtggcggcaccggtgcaagtggttgctcttatgcaatag 178  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||   | |||||||||||||||||||||  ||||||||||||  || |||||||||    
T  11997290 taatttatttggtcttgcagccacgatgatatgtttatgggtggagtatggattctctatagtggcggcaccaatgcaagtggttgaactgatgcaatag 11997191  T
Q  179 tttcaaaaccgttggatctaactgcaagtggatatccaacggtttt 224  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  11997190 tttcaaaaccgttggatctgactgcaagtggatatccaacggtttt 11997145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 14148460 - 14148391
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaatt 85  Q
    |||||||||| | |||||||||||||| |||||| |||||| |||| || ||||||| | ||||||||||    
T  14148460 aatattttaggaggactaaaatcaaatgttgatatatttagggggaccacttacttattaaaccctaatt 14148391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 5879939 - 5879872
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaa 83  Q
    |||||||||||| |||||||||||||||||  || |||||| | ||  ||||||||| ||||||||||    
T  5879939 aatattttagaaagactaaaatcaaatattagtatatttagggagactatttacttatttaaccctaa 5879872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9861647 - 9861568
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    ||||||| || ||||||||||||| |  |||||||||||||| |||||| ||||||  |||  ||||||||| |||||||    
T  9861647 accaaaagcctaaagaatattttatagggactaaaatcaaatgttgatatatttaggaggactatttacttatttaaccc 9861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 28237316 - 28237284
Alignment:
Q  51 atttagagggatcatttacttaattaaccctaa 83  Q
    ||||| |||||||||||||||||||||||||||    
T  28237316 atttatagggatcatttacttaattaaccctaa 28237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 38298770 - 38298693
Alignment:
Q  4 aaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    ||||||| |||||||||||||||  |||| |||||||||||||||| |||||||  ||||||||||||| ||||||||    
T  38298770 aaaaacctaaagaatattttagagggacttaaatcaaatattgatatatttagactgatcatttacttatttaaccct 38298693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22297841 - 22297764
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaac 78  Q
    |||||||||| ||| |||||||||||  |||||||||||||| |||||| |||||||||||  ||||||||| |||||    
T  22297841 accaaaaacctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 25906134 - 25906216
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaa 83  Q
    ||||||| || ||||||||||| ||   |||||||||||||| |||||| ||||||  |||| ||||||||| ||||||||||    
T  25906134 accaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttacttatttaaccctaa 25906216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 33626007 - 33626057
Alignment:
Q  31 ctaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    ||||||||||||||||||| ||||||  |||||||||||||| ||||||||    
T  33626007 ctaaaatcaaatattgatatatttaggaggatcatttacttatttaaccct 33626057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 2846624 - 2846573
Alignment:
Q  29 gactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    |||||||||||||| |||||| |||||| |||| |||||||||| |||||||    
T  2846624 gactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 2858461 - 2858411
Alignment:
Q  29 gactaaaatcaaatattgatacatttagagggatcatttacttaattaacc 79  Q
    |||||||||||||| |||||| |||||| |||| |||||||||| ||||||    
T  2858461 gactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29673355 - 29673290
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    |||||||||| | |||||||||||||| ||| || |||||  |||| |||||||||| ||||||||    
T  29673355 aatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaaccct 29673290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 38900286 - 38900222
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    |||||||||| | ||||||||| |||||||| || |||||||||||  ||||||||| ||||||||    
T  38900286 aatattttagga-gactaaaataaaatattggtatatttagagggaaaatttacttatttaaccct 38900222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3936044 - 3935964
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    |||||||||  ||| |||||||||||  || | ||||||||||||| || ||||||| | | |||||||||| ||||||||    
T  3936044 accaaaaacgtaaaaaatattttagagggattgaaatcaaatattgttatatttagatgaaccatttacttatttaaccct 3935964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30172150 - 30172069
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    |||||||||| |||||||||||||    |||||||||||||| |||||| |||||| |||| |||||||||| |||||||||    
T  30172150 accaaaaacctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccatttacttatttaacccta 30172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30430349 - 30430271
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacc 79  Q
    ||||||| || |||||||||||||||   ||||||||||||| ||| || ||||||||||| |||||||||| ||||||    
T  30430349 accaaaagcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 43907899 - 43907976
Alignment:
Q  4 aaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    ||||||| ||| ||||||||||   |||||||||||||||||  || ||||| |||||||||||||||| |||||||||    
T  43907899 aaaaacctaaaaaatattttagggggactaaaatcaaatattagtatattta-agggatcatttacttatttaacccta 43907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 32618978 - 32619043
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    |||||||||||| |||||||||||||| |||||| ||||||| | |  ||||||||| ||||||||    
T  32618978 aatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttacttatttaaccct 32619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 4304325 - 4304404
Alignment:
Q  2 ccaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    ||||||| | || ||||||||||||  |||||||||||||| ||| || |||||| | ||| ||||||||| ||||||||    
T  4304325 ccaaaaatctaatgaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaaccct 4304404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 30430672 - 30430720
Alignment:
Q  29 gactaaaatcaaatattgatacatttagagggatcatttacttaattaa 77  Q
    ||||||||| ||||||||||| |||||| |||| |||||||||| ||||    
T  30430672 gactaaaattaaatattgatatatttagggggaccatttacttatttaa 30430720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 37172050 - 37172018
Alignment:
Q  51 atttagagggatcatttacttaattaaccctaa 83  Q
    ||||| |||||||||||||||||||||||||||    
T  37172050 atttatagggatcatttacttaattaaccctaa 37172018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18509576 - 18509495
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    |||||||||| || ||||||||||||  |||||||||||||| ||| || |||||| |||| |||||| ||| |||||||||    
T  18509576 accaaaaaccaaaggaatattttagagggactaaaatcaaatgttggtatatttagggggaccatttaattatttaacccta 18509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 980982 - 980920
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacc 79  Q
    |||||||||||  |||||||||||||| |||||| ||||| |||||||||||||||| ||||||    
T  980982 aatattttagag-gactaaaatcaaatgttgatatatttaaagggatcatttacttatttaacc 980920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 24225551 - 24225628
Alignment:
Q  2 ccaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacc 79  Q
    ||||||||| |||||||||||||  | || |||||||||||||| ||| |||| |||||| |||||| ||| ||||||    
T  24225551 ccaaaaacctaaagaatattttatgaagattaaaatcaaatattaatatattttgagggaccatttaattacttaacc 24225628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12874857 - 12874902
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattg 46  Q
    |||||||||| ||| |||||||||||  ||||||||||||||||||    
T  12874857 accaaaaacctaaataatattttagagggactaaaatcaaatattg 12874902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 41003344 - 41003315
Alignment:
Q  61 atcatttacttaattaaccctaatttattt 90  Q
    ||||||||||||||||||||||||||||||    
T  41003344 atcatttacttaattaaccctaatttattt 41003315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 25330628 - 25330560
Alignment:
Q  12 aaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    |||||| ||||||||  |||||||||||||| |||||  |||||| ||||  ||||||||| |||||||    
T  25330628 aaagaaaattttagagggactaaaatcaaatgttgatgtatttagggggactatttacttatttaaccc 25330560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 22679503 - 22679588
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaattt 86  Q
    |||||||||| ||  |||||||||||  |||||||||||||| ||| || |||||| |||||| |||||||| ||||| |||||||    
T  22679503 accaaaaacctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaactctaattt 22679588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 35294397 - 35294332
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    |||||||| ||  |||||||||||||| |||||| ||||| |||||||||||| ||| ||||||||    
T  35294397 aatattttcgatggactaaaatcaaatgttgatatatttaaagggatcatttaattatttaaccct 35294332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30749030 - 30748951
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    ||||||| || ||||||||||||||   |||||||||||||||||  || ||||||  ||| |||||||||| |||||||    
T  30749030 accaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30770481 - 30770402
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    ||||||| || ||||||||||||||   |||||||||||||||||  || ||||||  ||| |||||||||| |||||||    
T  30770481 accaaaagcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30749117 - 30749207
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaatttatttg 91  Q
    |||||||||  ||| |||||||||||   | ||||||||||| |||||| ||||||  |||| |||||| || |||||||||||| |||||    
T  30749117 accaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaaccctaattaatttg 30749207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30770568 - 30770658
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaatttatttg 91  Q
    |||||||||  ||| |||||||||||   | ||||||||||| |||||| ||||||  |||| |||||| || |||||||||||| |||||    
T  30770568 accaaaaacataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaaccctaattaatttg 30770658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14760050 - 14760131
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    ||||||| || ||| ||||||||||   || ||||||||||| ||| || |||||  ||||||||||||||| |||||||||    
T  14760050 accaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttacttatttaacccta 14760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16706414 - 16706333
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    ||||||| || |||||| ||||||||  |||||||||||||| ||| || |||||||||||  |||| || | |||||||||    
T  16706414 accaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatatttagagggaatattttctcatttaacccta 16706333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32800301 - 32800381
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    |||||||||| | | |||||||||  | || |||||||||||||||||| |||||| ||||  ||||||||| || |||||    
T  32800301 accaaaaacctacataatattttatgaggattaaaatcaaatattgatatatttagtgggactatttacttatttgaccct 32800381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 31298903 - 31298982
Alignment:
Q  3 caaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    ||||| || |||||||||||||||   ||||||||||||||||| || ||||| |||||  ||||||||| |||||||||    
T  31298903 caaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaacccta 31298982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 6190620 - 6190566
Alignment:
Q  29 gactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaa 83  Q
    |||||||||||||| |||||| |||||| | ||||||||||||| ||||||||||    
T  6190620 gactaaaatcaaatgttgatatatttagggagatcatttacttagttaaccctaa 6190566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34637601 - 34637683
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccctaa 83  Q
    ||||||||||  |||||||||||||    ||||||||||||| |||||| |||||| | ||  ||||||||| ||||||||||    
T  34637601 accaaaaacctcaagaatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttacttatttaaccctaa 34637683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 24704371 - 24704315
Alignment:
Q  16 aatattttagaatgactaaaatcaaatattgatacatttagagggatcatttactta 72  Q
    ||||||||||   |||||||||||||||||| || ||||||||| | ||||||||||    
T  24704371 aatattttagggagactaaaatcaaatattggtatatttagaggaaccatttactta 24704315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 17615660 - 17615605
Alignment:
Q  17 atattttagaatgactaaaatcaaatattgatacatttagagggatcatttactta 72  Q
    ||||||||| | ||||||||||||||||| ||| |||||||||| |||||||||||    
T  17615660 atattttaggaggactaaaatcaaatattcatatatttagaggggtcatttactta 17615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33752710 - 33752791
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    ||||||| || ||||||||||||||   |||||||||||||| |||||| ||||| | ||| | |||||||| |||||||||    
T  33752710 accaaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttacttatttaacccta 33752791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17431137 - 17431209
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaa 73  Q
    ||||||| || ||| ||||||||||   |||||||||||||| |||||| ||||||| ||| |||||||||||    
T  17431137 accaaaagcctaaaaaatattttagggggactaaaatcaaatgttgatatatttagatggaccatttacttaa 17431209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 33752377 - 33752322
Alignment:
Q  5 aaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagaggg 60  Q
    |||| ||||||||||||||||   ||||||||||||||||||||| ||||| ||||    
T  33752377 aaaagccaaagaatattttagggggactaaaatcaaatattgatatatttaaaggg 33752322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 17430778 - 17430713
Alignment:
Q  15 gaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    ||||||||||||  |||||||||||||| ||| || |||||||||||  ||||| ||| |||||||    
T  17430778 gaatattttagagggactaaaatcaaatgttggtatatttagagggacaatttatttacttaaccc 17430713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31172352 - 31172433
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaacccta 82  Q
    |||||||||| ||| |||||||||| | || ||||||||||| ||  || ||||| |||||||||||||||| |||| ||||    
T  31172352 accaaaaacctaaaaaatattttaggaggattaaaatcaaatgtttgtatatttaaagggatcatttacttatttaatccta 31172433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 29635286 - 29635235
Alignment:
Q  29 gactaaaatcaaatattgatacatttagagggatcatttacttaattaaccc 80  Q
    |||||||||||||| |||||| |||||| |||| |||||||||| |||||||    
T  29635286 gactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 33258531 - 33258564
Alignment:
Q  51 atttagagggatcatttacttaattaaccctaat 84  Q
    ||||| ||||||||||||||||||||||||||||    
T  33258531 atttatagggatcatttacttaattaaccctaat 33258564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7760687 - 7760607
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatattgatacatttagagggatcatttacttaattaaccct 81  Q
    ||||||| || ||||||||||||||   ||||||||||| ||  || || ||||||| |||| ||||||||| ||||||||    
T  7760687 accaaaagcctaaagaatattttagggggactaaaatcatatgctggtatatttagaaggattatttacttatttaaccct 7760607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11629 - 11673
Alignment:
Q  1 accaaaaacccaaagaatattttagaatgactaaaatcaaatatt 45  Q
    |||||||||| ||  ||||||||||| ||||||||||||||||||    
T  11629 accaaaaacctaagaaatattttagagtgactaaaatcaaatatt 11673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University