View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_58 (Length: 236)

Name: NF19438_high_58
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_high_58
NF19438_high_58
[»] chr8 (2 HSPs)
chr8 (19-152)||(38934264-38934397)
chr8 (154-215)||(12341216-12341277)
[»] chr6 (3 HSPs)
chr6 (149-216)||(15674477-15674544)
chr6 (149-216)||(23346892-23346959)
chr6 (149-210)||(26205995-26206056)
[»] chr4 (6 HSPs)
chr4 (149-216)||(23872901-23872968)
chr4 (149-216)||(55299260-55299327)
chr4 (157-216)||(20675670-20675729)
chr4 (149-212)||(2632050-2632113)
chr4 (18-68)||(46645539-46645589)
chr4 (18-54)||(1585671-1585707)
[»] chr1 (2 HSPs)
chr1 (149-216)||(32352735-32352802)
chr1 (149-216)||(48072856-48072923)
[»] chr7 (1 HSPs)
chr7 (149-216)||(13440701-13440768)
[»] chr3 (1 HSPs)
chr3 (157-216)||(6175911-6175970)
[»] chr2 (5 HSPs)
chr2 (155-216)||(26894043-26894104)
chr2 (155-216)||(26899482-26899543)
chr2 (149-212)||(13550769-13550832)
chr2 (149-212)||(13551222-13551285)
chr2 (18-46)||(42152645-42152673)
[»] chr5 (1 HSPs)
chr5 (149-212)||(34481600-34481663)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 38934397 - 38934264
Alignment:
Q  19 ctacaaagaaagtagaagctgaacctgggcactagctgggggtggctccgtatatttcggttttgaggttaaaattattttaaatttgagtttctatttg 118  Q
    ||||||| ||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | ||| | ||||    
T  38934397 ctacaaaaaaagtagaagctgaatctggacactagctgggagtggctccgcatatttcggttttgaggttaaaattattttaaatttaaatttatgtttg 38934298  T
Q  119 aattgatggaacataatataataggtggaataaa 152  Q
    ||||||||||||||||||||||||||| ||||||    
T  38934297 aattgatggaacataatataataggtgaaataaa 38934264  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 12341277 - 12341216
Alignment:
Q  154 aaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaa 215  Q
    |||||| |||| |||||||||||| |  | |||| |||||||||||| ||||||||||||||    
T  12341277 aaggagaatgggggtttgggggtgagacagttgaaggaatttaatatggctttgttaggaaa 12341216  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 15674544 - 15674477
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  15674544 taaaaaaggagtatggcggtttgggggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 15674477  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 23346892 - 23346959
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  23346892 taaaaaaggagtatcgcggtttgggggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 23346959  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 26206056 - 26205995
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgtta 210  Q
    |||| ||||||| |||||||||||||||| ||| ||||| ||| ||||||||| | ||||||    
T  26206056 taaaaaaggagtgtggcggtttgggggtgaggagattgaaggagtttaatataacattgtta 26205995  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 23872901 - 23872968
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| ||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||    
T  23872901 taaaaaaggagtatggcggtttgggggtacggaaattgaaggagtttaatttagctttgttaggaaaa 23872968  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 55299327 - 55299260
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| ||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  55299327 taaaaaaggagtgtggcggtttgggggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 55299260  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 20675729 - 20675670
Alignment:
Q  157 gagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| ||| |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  20675729 gagtttggtggtttgggggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 20675670  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 2632113 - 2632050
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttagg 212  Q
    |||| ||||||| ||| |||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  2632113 taaaaaaggagtttggaggtttgggggtgcggaaattgaaggagtttaatttagttttgttagg 2632050  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 46645589 - 46645539
Alignment:
Q  18 gctacaaagaaagtagaagctgaacctgggcactagctgggggtggctccg 68  Q
    ||||||||| |||| | |||||| |||||||||||||||||||||||||||    
T  46645589 gctacaaaggaagttggagctgagcctgggcactagctgggggtggctccg 46645539  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 1585707 - 1585671
Alignment:
Q  18 gctacaaagaaagtagaagctgaacctgggcactagc 54  Q
    |||||||||||||| |||||||| |||||||||||||    
T  1585707 gctacaaagaaagttgaagctgagcctgggcactagc 1585671  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 32352735 - 32352802
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| |||||||||||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||    
T  32352735 taaaaaaggagtatggcggtttgggggtgaggaaattgaaggagtttaatttagctttgttaggaaaa 32352802  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 48072856 - 48072923
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| ||||||| ||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||    
T  48072856 taaaaaaggagtgtggcggtttggaggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 48072923  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 13440768 - 13440701
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||| ||||||| ||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||    
T  13440768 taaaaaaggagtgtggcggtttggtggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 13440701  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 6175911 - 6175970
Alignment:
Q  157 gagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    |||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  6175911 gagtattgcggtttgggggtgcggaaattgaaggagtttaatttagctttgttaggaaaa 6175970  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 26894043 - 26894104
Alignment:
Q  155 aggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    ||||||||| |||||||||||||||||| |||| ||| |||||| || ||||||||||||||    
T  26894043 aggagtatgacggtttgggggtgcggaagttgaaggagtttaatttaactttgttaggaaaa 26894104  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 26899482 - 26899543
Alignment:
Q  155 aggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttaggaaaa 216  Q
    ||||||||| |||||||||||||||||| |||| ||| |||||| || ||||||||||||||    
T  26899482 aggagtatgacggtttgggggtgcggaagttgaaggagtttaatttaactttgttaggaaaa 26899543  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 13550832 - 13550769
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttagg 212  Q
    |||| ||||||| |||||||||||||||| ||| ||||| ||| ||||||||||| ||||||||    
T  13550832 taaaaaaggagtgtggcggtttgggggtgaggagattgaaggagtttaatatagcattgttagg 13550769  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 13551285 - 13551222
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttagg 212  Q
    |||| ||||||| |||||||||||||||| ||| ||||| ||| ||||||||||| ||||||||    
T  13551285 taaaaaaggagtgtggcggtttgggggtgaggagattgaaggagtttaatatagcattgttagg 13551222  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 42152645 - 42152673
Alignment:
Q  18 gctacaaagaaagtagaagctgaacctgg 46  Q
    |||||||||||||||||||||||||||||    
T  42152645 gctacaaagaaagtagaagctgaacctgg 42152673  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 34481663 - 34481600
Alignment:
Q  149 taaataaggagtatggcggtttgggggtgcggaaattgacggaatttaatatagctttgttagg 212  Q
    |||| ||||||||||| |||||||||||| ||||| ||| ||| ||||| ||||||||||||||    
T  34481663 taaaaaaggagtatggtggtttgggggtgaggaaagtgaaggagtttaacatagctttgttagg 34481600  T

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