View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_59 (Length: 236)
Name: NF19438_high_59
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_59 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 107282 - 107503
Alignment:
| Q |
1 |
gtttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgt |
100 |
Q |
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| T |
107282 |
gtttcacactgcatctcccttctatcatcatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgt |
107381 |
T |
|
| Q |
101 |
gccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107382 |
gccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaa |
107481 |
T |
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| Q |
201 |
cttggtttactgatgctgattt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
107482 |
cttggtttactgatgctgattt |
107503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 87919 - 88139
Alignment:
| Q |
2 |
tttcacactgcatctcccttctatcatgatgtcaaagaccctcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtg |
101 |
Q |
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| T |
87919 |
tttcacactgcatctcccttttatcatgatgtcaaggatcctcaggctgaattgattgatcctgctctcaaagggactctcaatgttctcaactcatgtg |
88018 |
T |
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| Q |
102 |
ccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaac |
201 |
Q |
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| T |
88019 |
ctaaatccccatcactcaaacgtgttgttttaacttcttctattgctgctgttgcttataatgggaagcctcgaactcctgatgttgttgttgatgagac |
88118 |
T |
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| Q |
202 |
ttggtttactgatgctgattt |
222 |
Q |
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| T |
88119 |
ttggtttacagatgctgattt |
88139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 2707050 - 2707190
Alignment:
| Q |
74 |
gggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgctgttgcgtacaatgaaaagcctc |
173 |
Q |
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| T |
2707050 |
gggactctaaatgtgctgaaatcatgtgcaaaatttccatctctgaaacgtgttgtattaacctcttctatcgctgcggttgcgtacaataaaaagcctc |
2707149 |
T |
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| Q |
174 |
gaactcctgatgttgttgttgatgaaacttggtttactgat |
214 |
Q |
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| T |
2707150 |
aaactctcgatgtagttgtcgatgaaacttggtttactgat |
2707190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 44784893 - 44784723
Alignment:
| Q |
52 |
gttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccattactcaaacgtgttgtcttaacctcttctgctgctgct |
151 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||| |
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| T |
44784893 |
gttgattgatcctgcgctcaaagggactctcaatgttctcaactcatgtgcaaaatccccatcactcaaacgtgttgtcttaacatcttctgtcgctgct |
44784794 |
T |
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| Q |
152 |
gttgcgtacaatgaaaagcctcgaactcctgatgttgttgttgatgaaacttggtttactgatgctgattt |
222 |
Q |
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| T |
44784793 |
gttgcatacaatggaaagcctcgaactcctgatgttgttgttgatgagacttggtttactgatgctgattt |
44784723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 25934237 - 25934307
Alignment:
| Q |
43 |
tcaggctgagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgccaaatcgccat |
113 |
Q |
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| T |
25934237 |
tcaggctgagttgattgatccggcactgaagggaactcttaatgttcttcaatcatgtgcaaaatcaccat |
25934307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 26101881 - 26101933
Alignment:
| Q |
50 |
gagttgattgatcctgcactcaacgggactctcaatgttctcaaatcatgtgc |
102 |
Q |
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| T |
26101881 |
gagttgattgatccggcacttaagggaactcttaatgttcttaaatcatgtgc |
26101933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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