View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_6 (Length: 534)
Name: NF19438_high_6
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 39470890 - 39471392
Alignment:
| Q |
18 |
gattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagaca |
117 |
Q |
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| T |
39470890 |
gattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactttcttcatgttggagcacaagaca |
39470989 |
T |
|
| Q |
118 |
tacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgnnnnnnnnnnncctttctttaggaacaggaatagatgaattcgtgt |
217 |
Q |
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| T |
39470990 |
tacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgtttttttttt-cctttctttaggaacaggaatagatgaattcgtgt |
39471088 |
T |
|
| Q |
218 |
agagatttagtatcataataaaagaaatctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgagattgaaatgttt |
317 |
Q |
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| T |
39471089 |
agagatttagtatcataataaaagaaacctttgtgagtgatgtcatggctttgcgggatggcatgatatgagaactttatggcatgagattgaaatgttt |
39471188 |
T |
|
| Q |
318 |
gtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgtacaagaatatgt |
417 |
Q |
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| T |
39471189 |
gtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatggaccgtgcaagtttttgtggtgtacaagaatatgt |
39471288 |
T |
|
| Q |
418 |
aaaaactatctg-nnnnnnnnnnnnnnnntgtaaaactagattgttgttattatcttgttggaattatttattattcaataatatgtgtggtgtgtggtc |
516 |
Q |
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| T |
39471289 |
aaaaactatctgaaaaaaggaaaaaaaaatgtaaaactggattgttgttattatcttgttggaattatttattattcaataatatgtgtggtgtgtggtg |
39471388 |
T |
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| Q |
517 |
tgtg |
520 |
Q |
| |
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|||| |
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| T |
39471389 |
tgtg |
39471392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 39464667 - 39464816
Alignment:
| Q |
18 |
gattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagaca |
117 |
Q |
| |
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|||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| |||||| |||| |
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| T |
39464667 |
gattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctgctttcttcattttgaagcacaggaca |
39464766 |
T |
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| Q |
118 |
tacacttactcagtgtgagttactgtttctctgaattgttctttgatata |
167 |
Q |
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| T |
39464767 |
tgcacttactcggtttgagttgatgtttttctgaattgttgtttgatata |
39464816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 39460239 - 39460139
Alignment:
| Q |
65 |
cgggaaaagggataaacaccacttccactgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgat |
164 |
Q |
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||||||||||||||||||| ||||| || ||||||| |||||||||| || |||| ||||||| ||| ||||||||||| | |||||||||||||||| |
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| T |
39460239 |
cgggaaaagggataaacacaacttctgctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttt-tttgaattgttctttgat |
39460143 |
T |
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| Q |
165 |
atac |
168 |
Q |
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|||| |
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| T |
39460142 |
atac |
39460139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 39472072 - 39471978
Alignment:
| Q |
18 |
gattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca |
112 |
Q |
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|||||||||||| || ||||| | |||||||||| |||||| |||| |||||||||| |||||||||||| || ||||||| |||||||||| |
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| T |
39472072 |
gattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttggagcaca |
39471978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 39464853 - 39464898
Alignment:
| Q |
226 |
agtatcataataaaagaaatctttgtgagtgatgtcatggctttgc |
271 |
Q |
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| T |
39464853 |
agtatcataataagaggaatctttgtgagtgatgtcatggctttgc |
39464898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 39451036 - 39450942
Alignment:
| Q |
18 |
gattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttccactgtcttcatgttggagcaca |
112 |
Q |
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|||||||||||| ||||| || | || ||||||||||| | ||| | ||||||||||||||||||||||| || ||||||| ||| |||||| |
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| T |
39451036 |
gattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttgaagcaca |
39450942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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