View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_62 (Length: 228)
Name: NF19438_high_62
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_62 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30473504 - 30473719
Alignment:
| Q |
1 |
aaaacaaaaatatctcaaagttatcttatgtgaaccaaatacaaaaccagtaattaataatatcataacaacaacaaattacaaatttgatgtatcattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30473504 |
aaaacaaaaatatctcaaagttatcttatgtgaaccaaatacaaaaccagtaattaataatatcataacaacaacaaattacaaatttgatgtatcattt |
30473603 |
T |
|
| Q |
101 |
taaactgagtgnnnnnnnnnnnnnnnnnnnngtcattgaaagagacagaaaatttatatgctaaaagggcattataaggctctaagacagattttagatg |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30473604 |
taaactgagtgaaaaacatgaaaaaacaaaagtcattgaaagagacagaaaatttatatgctaaaagggcattataaggctctaagacagattttagatg |
30473703 |
T |
|
| Q |
201 |
tctgtttttctctccc |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
30473704 |
tctgtttttctctccc |
30473719 |
T |
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