View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_high_69 (Length: 217)

Name: NF19438_high_69

Description: NF19438

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19438_high_69

[»] chr3 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 99; E-Value: 5e-49

Query Start/End: Original strand, 14 - 116

Target Start/End: Complemental strand, 972858 - 972756

Alignment:

Q	14	aaaatatcaaggacgtctaaaagcgaaagacaatacatttgcaaggacttaaataaaatacaaactagagggactaaaagtagaaaatgatatatttcta	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	972858	aaaatatcaaggacgtctaaaagcgaaagacaatacatttgcaaggacttaaataaaataaaaactagagggactaaaagtagaaaatgatatatttcta	972759	T

Q	114	agg	116	Q
		\|\|\|
T	972758	agg	972756	T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 23 - 110

Target Start/End: Complemental strand, 5587638 - 5587550

Alignment:

Q	23	aggacgtctaaaagcgaaagacaatacatttgcaaggacttaaataaaatacaaactagagggact-aaaagtagaaaatgatatattt	110	Q
		\|\|\|\|\|\|\|\| \|\| \|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5587638	aggacgtccaatagccaaaaacagtacatttgcaaggactcaaataaaatataacatagagggactaaaaagcacaaaatgatatattt	5587550	T

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