View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_high_7 (Length: 510)
Name: NF19438_high_7
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 27329256 - 27329460
Alignment:
| Q |
14 |
ttcttcaagatgaatgattgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagaaactccaagcctttgcaatacatcaa |
113 |
Q |
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| T |
27329256 |
ttcttcaacttgaatgtttgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagacactccaagcctttgcaatacatcaa |
27329355 |
T |
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| Q |
114 |
taaactcaagttgaccaagctcattttccgttttcgtaaacatcattcttactttttcctttaaaattgtgcattgctttgtgtgcattacttcctgaat |
213 |
Q |
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||| |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||| |
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| T |
27329356 |
taagctcaagttgagtaagctcattttccgttttgttaagcatcattcttactttttcctttagaattgagcattgctttctgtacattacttcctgaat |
27329455 |
T |
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| Q |
214 |
taagt |
218 |
Q |
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||||| |
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| T |
27329456 |
taagt |
27329460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 27446762 - 27446961
Alignment:
| Q |
11 |
ttattcttcaagatgaatgattgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagaaactccaagcctttgcaatacat |
110 |
Q |
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||||||||||| ||| ||| |||| |||||||||||| |||||||| | || |||||||||||||| || |||| || ||||||||||||||||||| |
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| T |
27446762 |
ttattcttcaacatggatgtttgtgagttgtaaatgttgtccaatattttccctatttcattgttaaattgataagccacaccaagcctttgcaatacat |
27446861 |
T |
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| Q |
111 |
caataaactcaagttgaccaagctcattttccgttttcgtaaacatcattcttactttttcctttaaaattgtgcattgctttgtgtgcattacttcctg |
210 |
Q |
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| T |
27446862 |
caataaattcaagttgatcaatctcattttccattttgttaaacatcattcttactttttcctttagcattaagaattcctttgtgtgctttacttcctg |
27446961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 18839712 - 18839585
Alignment:
| Q |
14 |
ttcttcaagatgaatgattgtttgttgtaaatgttatccaatatgtccctaatttcattgttaaaatggtaagaaactccaagcctttgcaatacatcaa |
113 |
Q |
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|||||||| || ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
18839712 |
ttcttcaacttggatgtttgtttgttgtaaatgttgtccaatatatccctaatttcattgttaaaatggtaagacactccaatcctttgcaatacatcaa |
18839613 |
T |
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| Q |
114 |
taaactcaagttgaccaagctcattttc |
141 |
Q |
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|||||||||||||| ||||||| ||||| |
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| T |
18839612 |
taaactcaagttgatcaagctcgttttc |
18839585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 1890783 - 1890741
Alignment:
| Q |
450 |
ttttaataaaacctcaggggatgtgagtgcaatttgctcttat |
492 |
Q |
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| T |
1890783 |
ttttaataaaacctgaagggaggtgagtgcaatttgctcttat |
1890741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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