View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_10 (Length: 484)
Name: NF19438_low_10
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 42151553 - 42151182
Alignment:
| Q |
1 |
gatgtgatttgattgaagtaattatgtgttaccttacctgagtttatccatgtgcagtgcttggaggagaatgaggagttgataatgaaaatactggaag |
100 |
Q |
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| T |
42151553 |
gatgtgatttgattgaagtaattatgtgttaccttacctgagtttatccatgtgcagtgcttggaggagaatgaggagttgataatgaaaatactggaag |
42151454 |
T |
|
| Q |
101 |
gtcaaaagcaggggaagcacagcgagctcggaccgtgagtagccnnnnnnnnnnnactgtgtttaatttgtattgcttttgtttgtttctaggtattatc |
200 |
Q |
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| T |
42151453 |
gtcaaaagcaggggaagcacagcgagctcggaccgtgagtagccttttttttt--actgtgtttaatttgtattgcttttgtttgtttctaggtattatc |
42151356 |
T |
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| Q |
201 |
aagtggtttaaatttcagttgcattatcttttctgctgtcatgggtctgaatcattttgtttgtattgatgaattttattgcatacattttagtactctg |
300 |
Q |
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| T |
42151355 |
aagtggtttaaatttcagttgcattatcttttctgctgtcatgggtctgaatcattttgtttgtattgatgaattttattgcatacattttagtactctg |
42151256 |
T |
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| Q |
301 |
tggtagttagtttggaaaccctctactttacataaacatgttatccctttttggttgttttttgtcatagatta |
374 |
Q |
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| T |
42151255 |
tggtagttagtttggaaaccctctactttacataaacatgttatccctttttggttgttttttgtcatagatta |
42151182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 371 - 468
Target Start/End: Complemental strand, 42151162 - 42151065
Alignment:
| Q |
371 |
attagcagatttattactgaagctgtggttcaattgacaaattgctatgtgtgctttgctaacccttgaaaagaaaggaatataagttatggttctta |
468 |
Q |
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| T |
42151162 |
attagcagatttattactgaagctgtggttcaattgacaaattgctatttgtgctttgctaacccttgaaaagaaaggaatataagttatggttctta |
42151065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 30835550 - 30835624
Alignment:
| Q |
56 |
agtgcttggaggagaatgaggagttgataatgaaaatactggaaggtcaaaagcaggggaagcacagcgagctcg |
130 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30835550 |
agtgcttggaggagaacgaggagttgataatggcaatactggaaggtcaaaagcaggggaagcacggcgagctcg |
30835624 |
T |
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