View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19438_low_12 (Length: 473)
Name: NF19438_low_12
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 275 - 458
Target Start/End: Complemental strand, 9135298 - 9135115
Alignment:
| Q |
275 |
gtttacttttttatgcaaatttcagatttttcgcttttgtgtttgaatttagcttctgggtattattataatttcttattctttgatttttatgaaaaca |
374 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9135298 |
gtttaattttttatgcaaatttcagatttttcgctgttgtgtttgaatttagcttctgggtattattataatttcttattctttgatttttatgaaaaca |
9135199 |
T |
|
| Q |
375 |
gttgagttagggaagcagatttcattcactaagaagttgcttaacaagtcagatcgctatgtggctttcaaggttctcattatt |
458 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9135198 |
gttgagttagggaagctgatttcattcactaagaagttgcttaacaagtcagatcgctatgtggctttcaaggttctcattatt |
9135115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 9135475 - 9135309
Alignment:
| Q |
57 |
aaaccctaaaaaacaaacccttttcgaaaacatgggacaaaggatctcttcttgcattcacccacaagctgcttgttccaattcggtttctccattttat |
156 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9135475 |
aaaccctaaaaaacaaaccctttttgaaaacatgggacaaaggatctcttcttgcattcacccacaagctgcttgttccaattcggtttctccattttat |
9135376 |
T |
|
| Q |
157 |
gctgattgtcaaaaattgaaaccacaagaacaagatcctttctatattcggatacatcatcaggaga |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9135375 |
gctgattgtcaaaaactgaaaccacaagaacaagatcctttctatattcggatacatcatcaggaga |
9135309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 301 - 450
Target Start/End: Complemental strand, 9310303 - 9310154
Alignment:
| Q |
301 |
tttttcgcttttgtgtttgaatttagcttctgggtattattataatttcttattctttgatttttatgaaaacagttgagttagggaagcagatttcatt |
400 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||| |||| |||||||| || |||||||||| |||| |
|
|
| T |
9310303 |
tttttggcttttgtgtttggttttagcttctgggtattattctaattttttgttctttgatttttgtgaacacagttgaattgaggaagcagatctcatg |
9310204 |
T |
|
| Q |
401 |
cactaagaagttgcttaacaagtcagatcgctatgtggctttcaaggttc |
450 |
Q |
| |
|
| || | ||||| ||||||||||||| ||| | ||||||||||||| |
|
|
| T |
9310203 |
ctctttgcagttgtctaacaagtcagataattatatagctttcaaggttc |
9310154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University