View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_17 (Length: 421)
Name: NF19438_low_17
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 33784453 - 33784837
Alignment:
| Q |
18 |
gaaaaaagcacctctcttgtgcttaagctgagaatagcttccttgttccacaatcttcccttctaacacataagcaattgagtcaagttctttgattgtg |
117 |
Q |
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| T |
33784453 |
gaaaaaagcacctctcttgtgcttaagctgagaatagcttccttgttccacaatcttcccttctaacacataagcaattgagtcaagttctttgattgtg |
33784552 |
T |
|
| Q |
118 |
ttaagtctatgtgccacaacaatggtagttcttcctaccataatcctatcaagtgcttcttgcacaacttgttctgattgcacatccaaagcacttgttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784553 |
ttaagtctatgtgccacaacaatggtagttcttcctaccataatcctatcaagtgcttcttgcacaacttgttctgattgcacatccaaagcacttgttg |
33784652 |
T |
|
| Q |
218 |
cttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcctcctgataattgaacccccctttctccaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33784653 |
cttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcctcctgataattgaacccccctttctccaca |
33784752 |
T |
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| Q |
318 |
ttcagtttcatatccatctttcaatgatctgcatcaccaaaattgaaaatgtgcacatttttaattcagcattaatcagaataat |
402 |
Q |
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| T |
33784753 |
ttcagtttcatatccatctttcaatgatctgcatcaccaaaattgaaaatgtgcacatttttaattcagcattaatcataataat |
33784837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 33788370 - 33788455
Alignment:
| Q |
208 |
gcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcctcctga |
293 |
Q |
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| T |
33788370 |
gcactagttgcttcatcaagcagaagaattactggattttttatgatagctcttgcaatggctattctttgcttttgtcctcctga |
33788455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 3431179 - 3431274
Alignment:
| Q |
207 |
agcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcctcctgataattgaac |
302 |
Q |
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| T |
3431179 |
agcactagttgcttcgtctaagagaaggatctttggatttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataattgaac |
3431274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 308
Target Start/End: Original strand, 2571696 - 2571745
Alignment:
| Q |
259 |
cttgcaattgctattctttgcttttgtcctcctgataattgaacccccct |
308 |
Q |
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| T |
2571696 |
cttgcaattgcaattctttgcttttgtccccctgacatttgaactcccct |
2571745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 27810500 - 27810409
Alignment:
| Q |
208 |
gcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcctcctgataattg |
299 |
Q |
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| T |
27810500 |
gcacttgtagcctcatctaggagaagaattgctggatttttcagcattgcccttgcaattgctattctctgcttttgtcctcctgataattg |
27810409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 5823602 - 5823515
Alignment:
| Q |
200 |
catccaaagcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcc |
287 |
Q |
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| T |
5823602 |
catccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc |
5823515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 5831998 - 5832085
Alignment:
| Q |
200 |
catccaaagcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcc |
287 |
Q |
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| T |
5831998 |
catccaatgcacttgttgcttcatcaagaagaaggatttttgggttcttcaatattgcccttgcaattgcaattctttgcttttgtcc |
5832085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 5766209 - 5766122
Alignment:
| Q |
200 |
catccaaagcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcc |
287 |
Q |
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| T |
5766209 |
catccaatgcacttgttgcttcatcgagaagaaggattcttgggttcttcaatattgccctagcaattgcaattctttgcttttgtcc |
5766122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 17872391 - 17872443
Alignment:
| Q |
262 |
gcaattgctattctttgcttttgtcctcctgataattgaacccccctttctcc |
314 |
Q |
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| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcc |
17872443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 41176783 - 41176907
Alignment:
| Q |
166 |
tcaagtgcttcttgcacaacttgttctgattgcaca-tccaaagcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgca |
264 |
Q |
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| T |
41176783 |
tcaagtgcttcttgcaccagcttttctgatt-cagagtccaatgcacttgttgcctcatcgaggagaagaattgctggattttttagcattgcccttgct |
41176881 |
T |
|
| Q |
265 |
attgctattctttgcttttgtcctcc |
290 |
Q |
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|||||||||||||| ||||||||||| |
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| T |
41176882 |
attgctattctttgtttttgtcctcc |
41176907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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