View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19438_low_18 (Length: 419)

Name: NF19438_low_18
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19438_low_18
NF19438_low_18
[»] chr8 (2 HSPs)
chr8 (130-401)||(6868459-6868729)
chr8 (6-89)||(6868728-6868811)
[»] chr1 (1 HSPs)
chr1 (15-162)||(47149928-47150072)
[»] chr7 (4 HSPs)
chr7 (322-401)||(14080228-14080307)
chr7 (322-401)||(14390256-14390335)
chr7 (168-282)||(14080018-14080121)
chr7 (168-282)||(14390046-14390149)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 130 - 401
Target Start/End: Complemental strand, 6868729 - 6868459
Alignment:
Q  130 aggtatgttattttatttgatttgattcttttcctcagagccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacaca 229  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6868729 aggtatgttatttgatttgatttgattcttttcctcagagccattttta-gccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacaca 6868631  T
Q  230 cacgacacgataagaagggctgaacttatacacaaccattattaaacacaccacataatcactttgcatactccaccaaacaaattatctctatggcttc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  6868630 cacgacacgataagaagggctgaacttatacacaaccattattaaacacaccacataatcactttgcatactccaccaaaccaatttcctctatggcttc 6868531  T
Q  330 tcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctctaaaaaaccacttct 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6868530 tcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctctaaaaaaccacttct 6868459  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 6868811 - 6868728
Alignment:
Q  6 agagagatgaaaatcgaatatattgcttacccaatagtgaagattcaatctttagtgcgttaacaataacaacaggttctggag 89  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6868811 agagagatcaaaatcgaatatattgcttacccaatagtgaagattcaatctttagtgcgttaacaataacaacaggttctggag 6868728  T

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Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 47149928 - 47150072
Alignment:
Q  15 aaaatcgaatatattgcttacccaatagtgaagattcaatctttagtgcgttaacaataacaacaggttctggagaaatagcttattcatctggaaccac 114  Q
    ||||||||| |||||||||| |||||||| |||||||||| |||||||| |||||||   |||  ||||||||||||||||||| ||||||||||| |||    
T  47149928 aaaatcgaagatattgcttatccaatagtaaagattcaatttttagtgcattaacaa---caatgggttctggagaaatagcttcttcatctggaaacac 47150024  T
Q  115 caacgtttctagctcaggtatgttattttatttgatttgattcttttc 162  Q
     |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  47150025 taacgtttctagctcaggtatgttattttctttgatttgattcatttc 47150072  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 14080228 - 14080307
Alignment:
Q  322 atggcttctcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctctaaaaaaccacttct 401  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||    
T  14080228 atggcttctcttctcaacggcagcgtttcttccttacacccacaacccactcaaaccagcttctcaaaaaaagcacttct 14080307  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 14390256 - 14390335
Alignment:
Q  322 atggcttctcttctcaacggcaacgtttcttccttacactcacaacctactcaaaccagcttctctaaaaaaccacttct 401  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||    
T  14390256 atggcttctcttctcaacggcagcgtttcttccttacacccacaacccactcaaaccagcttctcaaaaaaagcacttct 14390335  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 14080018 - 14080121
Alignment:
Q  168 agccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacacacacgacacgataagaagggctgaacttatacacaacca 267  Q
    ||||||||| ||||||||||||||    |||||||||||||| |||||    ||||||||||||||||| ||||||   || ||||||||||||||||||    
T  14080018 agccattttgatgccaaaacgggt----ccccacacaaactagtacgt----gtgtgacacacacgacatgataag---ggttgaacttatacacaacca 14080106  T
Q  268 ttattaaacacacca 282  Q
    |||||||||||||||    
T  14080107 ttattaaacacacca 14080121  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 14390046 - 14390149
Alignment:
Q  168 agccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacacacacgacacgataagaagggctgaacttatacacaacca 267  Q
    ||||||||| ||||||||||||||    |||||||||||||| |||||    ||||||||||||||||| ||||||   || ||||||||||||||||||    
T  14390046 agccattttgatgccaaaacgggt----ccccacacaaactagtacgt----gtgtgacacacacgacatgataag---ggttgaacttatacacaacca 14390134  T
Q  268 ttattaaacacacca 282  Q
    |||||||||||||||    
T  14390135 ttattaaacacacca 14390149  T

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