View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_2 (Length: 598)
Name: NF19438_low_2
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 13 - 582
Target Start/End: Complemental strand, 30473480 - 30472893
Alignment:
| Q |
13 |
agcaaaggtaattgtgaattctttcaaggacaaagtggtacaaacaaggaagggaattatggaagagaaaatgatgatgagtttgttaagtgcatgtgca |
112 |
Q |
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| T |
30473480 |
agcaaaggtaattgtgaattctttcaaggacaaagtggtacaaacaaggaagggaattatggaagagaaaatgatgatgagtttgttaagtgcatgtgca |
30473381 |
T |
|
| Q |
113 |
cctttttaactgttttggggttttgcatgatactcttgctgattaattatgtttttctggaggattagatgagcgatgcaaggagggaacaaggttggac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30473380 |
cctttttaactgttttggggttttgcatgatactcttgctgattaattatgtttttctggaggattagatgagcgatgcaaggagggaacaagggtggac |
30473281 |
T |
|
| Q |
213 |
tgggataagatagcacacattccaaaattagacattcgttagaattaaaatgaagaaacatacattgtgttttctgtgatgtttttcaatgataagttta |
312 |
Q |
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| T |
30473280 |
tgggataagatagcacacattccaaaattagacattcgttagaattaaaatgaagaaacaaacattgtgttttctgtgatgtttttcaatgataagttta |
30473181 |
T |
|
| Q |
313 |
gatcattgtgttttctttatttcactttcttgctacttatcagttcggtacatgaacatgttcttaatattcgttttt------------------attt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
30473180 |
gatcattgtgttttctttatttcactttcttgctacttatcagttcggtacatgaacatgttcttattattcgtttttatttaggtttgatttataattt |
30473081 |
T |
|
| Q |
395 |
tcacgataagaccatcaattagcactaacaattaagatttgacaagaaaacaaagtgaatagaattctgataatctattcaaaactctgaaacacaacct |
494 |
Q |
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| T |
30473080 |
tcatgataagaccatcaattagcactaacaattaagatttgacaagaaaacaaagtgaatagaattctgataatctcttcaaaactctgaaacacaacct |
30472981 |
T |
|
| Q |
495 |
aaggttgaaatgccgattacttcgatggcgtcaaacctatatttgactgtctgagtctaaccataatcttctgcaatggccaaagttg |
582 |
Q |
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| T |
30472980 |
aaggttgaaatgccgattacttcgatggcgtcaaacctatatttgactgtctgagtctaaccataatcttctgcaatggccaaagttg |
30472893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 283 - 572
Target Start/End: Complemental strand, 30395664 - 30395354
Alignment:
| Q |
283 |
tttctgtgatgtttttcaatgataagtttagatcattgtgttttcttt-atttcactttcttgctacttatcagttcggtacatgaacatgttcttaata |
381 |
Q |
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||||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
30395664 |
tttctgtaatgtttttcaatgataagttcaaatcattgtgttttcttttatttcactttcttgctacttattagttcggtacatggatatgttcttaata |
30395565 |
T |
|
| Q |
382 |
ttcgtttttattt------------------tcacgataagaccatcaattagcactaacaattaagatttgacaagaaaacaaagtgaatagaattctg |
463 |
Q |
| |
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| T |
30395564 |
tccgtttttatttgggttaaatttataattttcatcataagaccatcaattaacactaagaattaagatttgacaataacacaaagtgaatagaattctg |
30395465 |
T |
|
| Q |
464 |
ata--atctattcaaaactctgaaacacaacctaaggttgaaatgccgattacttcgatggcgtcaaacctatatttgactgtctgagtctaaccataat |
561 |
Q |
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|| |||| || ||||||||||||| | || ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30395464 |
ctatgatctcttataaactctgaaacatagcccaagattgaaatgctgattacttagatggcgtcaaacctatatttgactgtctgagtctgaccataat |
30395365 |
T |
|
| Q |
562 |
cttctgcaatg |
572 |
Q |
| |
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||||||||||| |
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| T |
30395364 |
cttctgcaatg |
30395354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 30395903 - 30395790
Alignment:
| Q |
159 |
ttatgtttttctggaggattagatgagcgatgcaaggagggaacaaggttggactgggataagatagcacacattccaaaattagacattcgttagaatt |
258 |
Q |
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|||||||| |||||||||||| ||||||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30395903 |
ttatgtttgtctggaggattaaatgagcgatgcaacgagggaacaagggtgtactgggaaaagatagcacacattccaaaattagacattcgttagaatt |
30395804 |
T |
|
| Q |
259 |
aaaatgaagaaaca |
272 |
Q |
| |
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|||||||||||||| |
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| T |
30395803 |
aaaatgaagaaaca |
30395790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 29710353 - 29710431
Alignment:
| Q |
176 |
attagatgagcgatgcaaggagggaacaaggttggactgggataagatagcacacattccaaaattagacattcgttag |
254 |
Q |
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| T |
29710353 |
attagaggaacgatgcaaggagggagcaagggaggattaggacaagatagcgcatgttccaaaattagacattagttag |
29710431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 13615504 - 13615426
Alignment:
| Q |
184 |
agcgatgcaaggagggaacaaggttggactgggataagatagcacacattccaaaattagacattcgttagaattaaaa |
262 |
Q |
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|||||||||||||||||||| || |||||||| |||||||| || ||||||||| || ||||||| |||||| |||| |
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| T |
13615504 |
agcgatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaactaaacattcgatagaatgaaaa |
13615426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 7098059 - 7098003
Alignment:
| Q |
183 |
gagcgatgcaaggagggaacaaggttggactgggataagatagcacacattccaaaa |
239 |
Q |
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| T |
7098059 |
gagcgatgcaaggagggaacaggggaagactgggacaagatagcccatattccaaaa |
7098003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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