View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_22 (Length: 393)
Name: NF19438_low_22
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 38580333 - 38580701
Alignment:
| Q |
11 |
cagagagaaggcaagtgtgtacgagaatcaaaattttcatgcaatatatgcaaaatgggtgctgtctgaagtgacaagacatgttcatacattccttcaa |
110 |
Q |
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| T |
38580333 |
cagagagaaggcaagtgtgtacgagaatcaaaattttcatgcaatatatgcaaaaagggtgctgtctgaagtgacaagacatgttcatccattccttcaa |
38580432 |
T |
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| Q |
111 |
cnnnnnnnnn----catgttcatgcatgttgacctcactcccaaacttttacgtaccacacacacctcatcactcttgtgtaatgtttgtgaatgaatca |
206 |
Q |
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| T |
38580433 |
aaaaaaaaaaaagacatgttcatgcatg---acctcactcccaaacttttacgtaccacacacacctcatcactcttgtgtaatgtttgcgaatgaatca |
38580529 |
T |
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| Q |
207 |
ccaactatatatatctactaaatcatataaatgttacaagcacttgtataaataaataaacatttcaccttatcataaccttctcaccacaattctaaat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38580530 |
ccaactatatatatctactaaatcatataaatgttacaagcacttgtataaataaataaacatttcaccttatcataacctgctcaccacaattctaaat |
38580629 |
T |
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| Q |
307 |
cccaatcaactttaggttatttgttgtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttct |
378 |
Q |
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| T |
38580630 |
cccaatcaactttaggttatttgttgtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttct |
38580701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 163 - 378
Target Start/End: Original strand, 38561276 - 38561485
Alignment:
| Q |
163 |
cacacacacctcatcactcttgtgtaatgtttgtgaatgaatcaccaactatatatatctactaaat--catataa-atgttacaagcacttgtataaat |
259 |
Q |
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| T |
38561276 |
cacacacacctcatcattcttatgtaatatttgtgaatgaaccagc---------tatctactaaatatcatatcatatgttacaagcatttatataaat |
38561366 |
T |
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| Q |
260 |
aaataaacatttcaccttatcataaccttctcaccacaattctaaatcccaatcaactttaggttatttgttgtaacaaaaattcaatggatcataatca |
359 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
38561367 |
aaataaacatttcaccttatcataaccttctcactacaattctaaatcccaatcaactttaggttatttgctgtaacaaaaattcaatggatcaaaatca |
38561466 |
T |
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| Q |
360 |
acaaggaggtcaaccttct |
378 |
Q |
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| T |
38561467 |
acaaggaggtcgaccttct |
38561485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 38605829 - 38605906
Alignment:
| Q |
301 |
ctaaatcccaatcaactttaggttatttgttgtaacaaaaattcaatggatcataatcaacaaggaggtcaaccttct |
378 |
Q |
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| T |
38605829 |
ctaaaacccaatcaactttaggttatttgttgtaacaaaaattcaatggatcaaaatcaacaaggaggtcgaccttct |
38605906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 38561142 - 38561205
Alignment:
| Q |
12 |
agagagaaggcaagtgtgtacgagaa-tcaaaattttcatgcaatatatgcaaaatgggtgctgt |
75 |
Q |
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| T |
38561142 |
agagagaaggcaagtgtgtacgtgaattcaagattttcatg-tatatatgcaaaatgggtgctgt |
38561205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 38605759 - 38605806
Alignment:
| Q |
156 |
tacgtaccacacacacctcatcactcttgtgtaatgtttgtgaatgaa |
203 |
Q |
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|||||| ||||||||||||||||||||| || ||| |||||||||||| |
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| T |
38605759 |
tacgtatcacacacacctcatcactcttatggaatatttgtgaatgaa |
38605806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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