View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_23 (Length: 387)
Name: NF19438_low_23
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_23 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 41544063 - 41544415
Alignment:
| Q |
14 |
agaggaagatcaaaagctagcacaatgcatccaaattcatggtgccaagaaatggaaaactgttgcaaacaattcaggtgataagacaaaagttattctt |
113 |
Q |
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| T |
41544063 |
agaggaagatcaaaagctagcacaatgcatccaaattcatggtgccaagaaatggaaaactgttgcaaacaattcaggtgataagacaaaagttattctt |
41544162 |
T |
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| Q |
114 |
ttaatttattactactcacaagtcacaagtgaaaaatttacaagtttagaaaagaaaggggaaaaaagttgttacttgaaaccaaagtaagtgctgcaat |
213 |
Q |
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| T |
41544163 |
tta-----ttactactcaaaagtcacaagtgaaaaatttacaagtttagaaaagaaaggggaaaaaagttgttacttgaaaccaaagtaagtgctgcaat |
41544257 |
T |
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| Q |
214 |
tttgtttgcaggtttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagagggaacatttcagatgaagaa |
313 |
Q |
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| T |
41544258 |
tttgtttgcaggtttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagagggaacatttcagatgaagaa |
41544357 |
T |
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| Q |
314 |
gaggatttgattattaggcttcacaaacttcttggaaacaggtttgttatattatatg |
371 |
Q |
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| T |
41544358 |
gaggatttgattattaggcttcacaaacttcttggaaacaggtttgttatattatatg |
41544415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 37807865 - 37807947
Alignment:
| Q |
214 |
tttgtttgcaggt-ttgaataggtgtggaaagagttgcaggctaagatggttgaactatcttagacccaatatcaagagaggga |
296 |
Q |
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| T |
37807865 |
tttgtttgcaggtcttgaa-aggtgtgggaagagttgtagactaaggtggttgaactatctaaggccagatatcaaaagaggga |
37807947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 2792089 - 2792051
Alignment:
| Q |
222 |
caggtttgaataggtgtggaaagagttgcaggctaagat |
260 |
Q |
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| T |
2792089 |
cagggttgaataggtgtggtaagagttgcaggctaagat |
2792051 |
T |
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Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 5600 - 5567
Alignment:
| Q |
240 |
gaaagagttgcaggctaagatggttgaactatct |
273 |
Q |
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| T |
5600 |
gaaagagttgtaggctaagatggttgaactatct |
5567 |
T |
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