View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_24 (Length: 378)
Name: NF19438_low_24
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 39082334 - 39081979
Alignment:
| Q |
7 |
ggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctt |
106 |
Q |
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| T |
39082334 |
ggttcaaataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctt |
39082235 |
T |
|
| Q |
107 |
tgggaaatgatgccgagtccttggttcctagttctaagtaatctgactggtattttttctggctatttacaatttttctggtctgaaattgtttaggata |
206 |
Q |
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| T |
39082234 |
tgggaaatgatgccgagttcttggttcctagttctaagtaatctgactggtattttttctggctatttacaatttttctggtctgaaattgtttaggata |
39082135 |
T |
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| Q |
207 |
tgcttgagtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtttgtactagtttgttccatatttttgtatttaaaa |
306 |
Q |
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| T |
39082134 |
tgcttgggtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactacttgtttgtactagtttgttccatattgttgtatttaaaa |
39082035 |
T |
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| Q |
307 |
gcttctactaaagtaatatgttcgagaacttcgtcccagttacaattcttaatata |
362 |
Q |
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| T |
39082034 |
gcttctactaaagtaatatgttcgagaacttcttcccagttacaattcttaatata |
39081979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 39087982 - 39087853
Alignment:
| Q |
13 |
aataaaagtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaa |
112 |
Q |
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| T |
39087982 |
aataaaagtaatgggaagattactgtgtttgctggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaa |
39087883 |
T |
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| Q |
113 |
atgatgccgagtccttggttcctagttcta |
142 |
Q |
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| T |
39087882 |
atgatgctgagttcatggttcctagttcta |
39087853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 39091365 - 39091233
Alignment:
| Q |
21 |
taatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgcc |
120 |
Q |
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| T |
39091365 |
taatggaaagattaccgtgtttgctggggttgaagaaggtagcatagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgct |
39091266 |
T |
|
| Q |
121 |
gagtccttggttcctagttctaagtaatctgac |
153 |
Q |
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| T |
39091265 |
gagttcttggttcctagttctaagtaatgtgac |
39091233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 39086913 - 39086809
Alignment:
| Q |
168 |
gctatttacaatttttctggtctgaaattgtttaggatatgcttgagtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactac |
267 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||||||||||| |||| |
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| T |
39086913 |
gctatttacattttttctggtctgaaattgtttaggatatgcttgtttgaacaataattaaggatatgttacattgctgtttcaattatttggtttctac |
39086814 |
T |
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| Q |
268 |
ttgtt |
272 |
Q |
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||||| |
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| T |
39086813 |
ttgtt |
39086809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 39070916 - 39070774
Alignment:
| Q |
21 |
taatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgcc |
120 |
Q |
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| T |
39070916 |
taatggaaaaattagtgtttttgctggtgctgaagaaggtagtatagatgttgaaatttgtctttcttatgagattttggaggctttggcaaatgatgtt |
39070817 |
T |
|
| Q |
121 |
gagtccttggttcctagttctaagtaatctgactggtattttt |
163 |
Q |
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|||| ||||||||| | ||||||||||| ||||| ||| |||| |
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| T |
39070816 |
gagttcttggttccaatttctaagtaatgtgacttgtaatttt |
39070774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 39080362 - 39080265
Alignment:
| Q |
51 |
tgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgccgagtccttggttcctagttctaagtaat |
148 |
Q |
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| T |
39080362 |
tgaagaaggtagtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaat |
39080265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 39097620 - 39097556
Alignment:
| Q |
52 |
gaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatga |
116 |
Q |
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||||||||||| |||||| |||||||||| ||||||| || || ||||||||| |||||||||| |
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| T |
39097620 |
gaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatga |
39097556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 39090039 - 39089992
Alignment:
| Q |
195 |
ttgtttaggatatgcttgagtgaacaatatttaaggatatgtcacttt |
242 |
Q |
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| T |
39090039 |
ttgtttaagatatgcttaggtgaacaatgtttaaggatatgtcacttt |
39089992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 39075159 - 39075094
Alignment:
| Q |
52 |
gaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgat |
117 |
Q |
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| T |
39075159 |
gaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatgat |
39075094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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