View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_27 (Length: 362)
Name: NF19438_low_27
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_27 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 3429724 - 3429363
Alignment:
| Q |
1 |
cttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttcc |
100 |
Q |
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| T |
3429724 |
cttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcataagagatctcaagaaaagattcgacatttctgatgcatgtgatgttcc |
3429625 |
T |
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| Q |
101 |
gaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctgaatgacagtgtatccaaattatgcattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429624 |
gaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctgaatgacagtgtatccaaattatgcattta |
3429525 |
T |
|
| Q |
201 |
atttgtaaatttggaagaagtgttagacttcctgcttatggtgtaatggagtttcatgttacataagttgaatggtgcaacggtgtttcatgttactcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3429524 |
atttgtaaatttggaagaagtgttagacttcctgcttatggtgtaatggagtttcatgttacataagttgaatggtgcgacggtgtttcatgttactcat |
3429425 |
T |
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| Q |
301 |
gtgtcaattatgcatttaatttgtaaacatgaaacaccattgtaccattcaacttatgtaaa |
362 |
Q |
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| T |
3429424 |
gtgtcaattatgcatttaatttgtaaacatgaaacaccattgtaccattcaacttatgtaaa |
3429363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 3315355 - 3315209
Alignment:
| Q |
26 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacat |
125 |
Q |
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| T |
3315355 |
tatgtggcaacttccgattccaaacaaaagagatctcaaggaaagatccaaaatttgtgatccatgtgatgttccaaattcagtaagacctgcatcatat |
3315256 |
T |
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| Q |
126 |
agaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
172 |
Q |
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| T |
3315255 |
atatcatcaagaaatcttctgaattcttgtttcagttgaatctctga |
3315209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 3391240 - 3391386
Alignment:
| Q |
26 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacat |
125 |
Q |
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| T |
3391240 |
tatgtggcaatttcccattccaatcaaaagagatctcaaggaatgatccgaaatgtgtgatgcatgtgatattcccaattcagtaagaccggcatcatat |
3391339 |
T |
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| Q |
126 |
agaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
172 |
Q |
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||| || |||||| ||||| |||||||| || ||||| |||||||| |
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| T |
3391340 |
agatcatcaagaaatcttctgaattcttgtttcagttgaatctctga |
3391386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 3364665 - 3364509
Alignment:
| Q |
27 |
atgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacata |
126 |
Q |
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|||||||||||||| || |||| || ||| ||||||| | ||||||||| |||| | ||||||||||||||| | |||| ||||| |||||||| ||| |
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| T |
3364665 |
atgtggcaacttccgataccaaacaaaagggatctcatggtaagattcgaaatttgtaatgcatgtgatgttctcatttcagtaagacctgcatcatata |
3364566 |
T |
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| Q |
127 |
gaccacgaagaaaccttcttaattcttgctttagttgcatctctgaatgacagtgta |
183 |
Q |
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|| || |||||| |||| ||||||||||| ||||| |||||||||| ||| |||| |
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| T |
3364565 |
gatcatcaagaaatcttccgaattcttgcttcagttgaatctctgaatcacattgta |
3364509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 7164365 - 7164437
Alignment:
| Q |
26 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgtt |
98 |
Q |
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|||||| ||||||||||||||||||| ||| ||||||||| ||||||| || |||||||||| |||||||||| |
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| T |
7164365 |
tatgtgacaacttcccattccaatcaaaagtgatctcaaggaaagatttgagatttctgatgaatgtgatgtt |
7164437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 3286221 - 3286294
Alignment:
| Q |
25 |
atatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgtt |
98 |
Q |
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| T |
3286221 |
atatgtggaaatttcccattccaatcaaaagtgatctcaaagaaggatttgagatttgtgatgcatgtgatgtt |
3286294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 6905534 - 6905680
Alignment:
| Q |
26 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacat |
125 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||| ||| || ||| |||| |||||||||||||||| | ||||| |||||| |||| || || |
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| T |
6905534 |
tatgtggcaacttcccattgtaatcaaaagagatttcaaggaaatatccgagatttttgatgcatgtgatgtttccgattcagtaagatttgcaccatat |
6905633 |
T |
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| Q |
126 |
agaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
172 |
Q |
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| T |
6905634 |
agaccatcaagaaaacttgttaatttttgaattagttgaatcactga |
6905680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32410778 - 32410867
Alignment:
| Q |
1 |
cttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtga |
94 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| || ||||| || |||| || | || |||||||||||| |
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| T |
32410778 |
cttgccaagagtatcaataactat----gtggcaacttcccattctaatcaaaagcgacctcaaagaatgatttgagaattgtgatgcatgtga |
32410867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 15803407 - 15803262
Alignment:
| Q |
27 |
atgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacata |
126 |
Q |
| |
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||||| |||||||| || |||| || ||| ||||||| |||||||| ||| |||| | |||| ||||||||||| | |||| ||||| |||||||| ||| |
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| T |
15803407 |
atgtgacaacttccgataccaaacaaaagggatctcatgaaaagatccgaaatttgtaatgcctgtgatgttcccacttcagtaagacctgcatcatata |
15803308 |
T |
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| Q |
127 |
gaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
172 |
Q |
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|| | |||||| ||||| |||||||| || ||||| |||||||| |
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| T |
15803307 |
gattatcaagaaatcttctgaattcttgtttcagttgaatctctga |
15803262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 20839118 - 20839079
Alignment:
| Q |
34 |
aacttcccattccaatcacaagagatctcaagaaaagatt |
73 |
Q |
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| T |
20839118 |
aacttcccattccaatcacaagtgatttcaagaaaagatt |
20839079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 5874 - 5937
Alignment:
| Q |
26 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgca |
89 |
Q |
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||||||||||||||||||| ||||| ||||||| ||||| |||||| ||| |||| ||||||| |
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| T |
5874 |
tatgtggcaacttcccattgtaatcaaaagagatttcaaggaaagatccgagatttgtgatgca |
5937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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