View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_28 (Length: 358)
Name: NF19438_low_28
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 12829573 - 12829902
Alignment:
| Q |
19 |
taatgtgcaagacatcaagagcaacacattaactgtggctttgtaggttgtctctgttctggcacactccattgatgggataaaaccgagaactgtcatg |
118 |
Q |
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| T |
12829573 |
taatgtgcaagacatcaagagcaacacattaactgtggctttgtaggttgtctctgttctggcacactccattgatgggataaaaccgagaactgtcatg |
12829672 |
T |
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| Q |
119 |
ttttggaagaatatgaagggataaaaccgagtatggcgaaggtgaagaacaagtatgccaatttaattgtattctcaaccagtattttcaattttttgtg |
218 |
Q |
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| T |
12829673 |
ttttggaagaatatgaagggataaaaccgagtatggcgaaggtgaagaacaagtatgccaatttaattgtattctcaaccagtattttcaattttttgtg |
12829772 |
T |
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| Q |
219 |
ttttaaatatttcattctttaatcaaattgtactaatcatgtagggtaaaagactctctagtcttttctccaatctttgttaaaaatccaaatggtagaa |
318 |
Q |
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| T |
12829773 |
ttttaaatatttcattctttaatcaaattgtactaatcatgtagggtaaaagactctctagtcttttctccaatctttgttaaaaatccaaatggtagaa |
12829872 |
T |
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| Q |
319 |
aatacatgtgttagatggatcatctttcat |
348 |
Q |
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| T |
12829873 |
aatacatgtgttagatggatcatctttcat |
12829902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 12824585 - 12824668
Alignment:
| Q |
67 |
tgtctctgttctggcacactccattgatgggataaaaccgagaactgtcatgttttggaagaatatgaagggataaaaccgagt |
150 |
Q |
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| T |
12824585 |
tgtctctgctctttcatactccatggaagggataaagccaagaaatgtcatgttttggaagaatatgaagggataagaccgagt |
12824668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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