View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_31 (Length: 342)
Name: NF19438_low_31
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 43068694 - 43068976
Alignment:
| Q |
14 |
agatggtaacagtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatg |
113 |
Q |
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| T |
43068694 |
agatggtaacagtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatg |
43068793 |
T |
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| Q |
114 |
aattctatgtgttcatcttcttcatcagagttagatgatgatcaagaagtatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatg |
213 |
Q |
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| T |
43068794 |
aattctatgtgttcatcttcttcatcagagttagatgatgatcaagaagcatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatg |
43068893 |
T |
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| Q |
214 |
gtcccttatatgaactatcagaacttatgaaccatctccctttgaagtaagca----atatttctcatgcatgatgcattttt |
292 |
Q |
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| T |
43068894 |
gtcccttatatgaactatcagaacttatgaaccatctccctttgaagtaagcaatatatatttctcatgcatgatgcattttt |
43068976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 43068992 - 43069030
Alignment:
| Q |
287 |
atttttatattctatatgaatattttgttgtactttaat |
325 |
Q |
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| T |
43068992 |
atttttatattctatatgaatattttgttgtactttaat |
43069030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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