View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19438_low_36 (Length: 297)
Name: NF19438_low_36
Description: NF19438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19438_low_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 3294996 - 3294718
Alignment:
| Q |
19 |
taagatcgtctgctatcaactagctaatcagttatccattacnnnnnnnnaccaaacagattttaaataaagtctaaacatttcattacctgtggcctag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3294996 |
taagatcgtctgctatcaactagctaatcagttatccattactcttttttaccaaacagattttaaacaaagtctaaacatttcattacctgtggcctag |
3294897 |
T |
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| Q |
119 |
gtcttcttggtctagaccttctaaacttctgcaaattactcgcattagcaacaccaagaacagcagattcatacgtagcaaaattccccaccattctctt |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294896 |
gtcttcttggtctagaccttctaaacttgtgcaaattactcgcattagcaacaccaagaacagcagattcatacgtagcaaaattccccaccattctctt |
3294797 |
T |
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| Q |
219 |
ctcagactccaacccaacatatgcctcaaccctattcaccactgcctcacccacccactgaaccgaattaaacaacaac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294796 |
ctcagactccaacccaacatatgcctcaaccctattcaccactgcctcacccacccactgaaccgaattaaacaacaac |
3294718 |
T |
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